BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894629
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26990.1 | Symbols: | Drought-responsive family protein | c... 937 0.0
> AT5G26990.1 | Symbols: | Drought-responsive family protein |
chr5:9491072-9493920 FORWARD LENGTH=1244
Length=1244
Score = 937 bits (507), Expect = 0.0
Identities = 567/596 (95%), Gaps = 4/596 (1%)
Strand=Plus/Plus
Query 118 GACAATTTCCTGGGGTTTGAGGAGATAGAAGGAGAAGATGACTTCAGAGAGGAGTATGCT 177
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 370 GACAATTTCTTGGGGTTTGAGGAGATAGAAGGAGAAGATGACTTCAGGGAGGAGTATGCT 429
Query 178 TGTCCGTTCTGCTCGGACTATTTTGATATCGTGTCTCTATGCTGCCACATTGATGAAGAT 237
|| |||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 430 TGCCCGTTCTGTTCAGACTATTTTGATATCGTCTCTCTATGCTGTCACATTGATGAAGAT 489
Query 238 CATCCTGTGGACGCAAAAAATGGGGTATGTCCCGTTTGTGCGGTGAAAGTGAGCTCTGAT 297
|||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 490 CATCCTATGGATGCAAAAAATGGGGTATGTCCCATTTGTGCGGTGAAAGTGAGCTCTGAT 549
Query 298 ATGATTGCTCATATAACCCTACAACATGCAAATATGTTCAAGGTGACGCGAAAAAGGAAA 357
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 550 ATGATTGCTCATATAACCCTACAACATGCAAATATGTTCAAGGTGACGCGGAAAAGGAAA 609
Query 358 TCAAGACGAGGCGGGGCTCAATCCATGCTATCGATCTTGAAGAGAGAGTTTCCTGATGGA 417
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TCAAGAAGAGGCGGGGCTCAATCCATGCTATCGATCTTGAAGAGAGAGTTTCCTGATGGA 669
Query 418 AATTTTCAGAGTCTATTTGAAGGAACATCGCGTGCTGTATCCTCTTCTTCTGCCAGTATA 477
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 670 AATTTTCAGAGCCTATTTGAAGGAACATCACGTGCTGTATCCTCTTCTTCTGCCAGTATA 729
Query 478 GCTGCTGATCCTTTGCTGTCTTCGTTCATTTCACCAATGACTGATGACTTTTTCATTTCT 537
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 730 GCTGCTGATCCTTTACTGTCTTCATTCATTTCACCAATGGCTGATGACTTTTTCATTTCT 789
Query 538 GAGTCAAGTCTATGTGCAGAAACAAGTTCTGCCAAGAAAACATTGCCTGAAAGTCTTGAC 597
|||||||||||||||||||| |||||||||||||||||||||||| | | ||| ||| |
Sbjct 790 GAGTCAAGTCTATGTGCAGACACAAGTTCTGCCAAGAAAACATTGAATCAGAGT-TTG-C 847
Query 598 C--ACAGGAATGTTGAAAAGCAGTCTCTTTCAGCAGAGGATCACAGAGAAAAGTTGAAAC 655
| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTGAAAGGAATGTTGAGAAGCAGTCTCTTTCAGCAGAGGATCACAGAGAAAAGTTGAAAC 907
Query 656 AGAGCGAGTTCGTTCAAGGGATTTTGAGCTCTATGATTCTTGAAGACGGCTTATAA 711
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 908 AGAGCGAGTTCGTTCAAGGGATATTGAGCTCTATGATTCTTGAAGACGGCTTATAA 963
Score = 135 bits (73), Expect = 4e-31
Identities = 75/76 (99%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTGATTCTTGGAGTGATCGTCTCGCATCGGCTTCAAGGAGATATCAGCTCGAT 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 295 ATGGATTCTGATTCTTGGAGTGATCGTCTCGCATCGGCTTCAAGAAGATATCAGCTCGAT 354
Query 61 TTCTTGTCTCGATCTG 76
||||||||||||||||
Sbjct 355 TTCTTGTCTCGATCTG 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5