BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894640

Length=735
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23910.1 | Symbols:  | ATP binding microtubule motor family ...   324    9e-88


> AT5G23910.1 | Symbols:  | ATP binding microtubule motor family 
protein | chr5:8068452-8072991 FORWARD LENGTH=2374
Length=2374

 Score =  324 bits (175),  Expect = 9e-88
 Identities = 235/262 (90%), Gaps = 12/262 (5%)
 Strand=Plus/Plus

Query  283  CATAAAGGTGTGATGATACATTTTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGG  342
            ||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||| 
Sbjct  607  CATAAAGGTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGA  666

Query  343  ATGAACTTTCTTGATATGGC-----------A-TCCAGGAAACAAAACAGTGCTCTAGCT  390
            ||||||||||||||||||||           | ||||||||||||||||||||| ||| |
Sbjct  667  ATGAACTTTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGT  726

Query  391  CCTCTAGAGATTGCCAGAGTTAATACTTTGATATATGCTTTACAGAATGTCATGTATGCT  450
            |||||||||||||| ||||||||||  | |||||||||||||||||||||||||||||||
Sbjct  727  CCTCTAGAGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCT  786

Query  451  CTCAACGGAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAA  510
            || |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  787  CTAAACGCAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAA  846

Query  511  GATTGTTTAAAAGGATGCAACA  532
            |||||||||||||||| |||||
Sbjct  847  GATTGTTTAAAAGGATCCAACA  868


 Score = 52.8 bits (28),  Expect = 4e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  257  TACCTGTGAAGTCACTCTCAGAATTCCA  284
            ||||||||||||||||||||||||||||
Sbjct  518  TACCTGTGAAGTCACTCTCAGAATTCCA  545



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35666244370


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5