BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894641
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05670.2 | Symbols: | signal recognition particle binding |... 896 0.0
> AT5G05670.2 | Symbols: | signal recognition particle binding
| chr5:1695730-1698124 REVERSE LENGTH=1113
Length=1113
Score = 896 bits (485), Expect = 0.0
Identities = 574/618 (93%), Gaps = 1/618 (0%)
Strand=Plus/Plus
Query 16 CTCCGAGATGGATCGTCGCACCAGGGTACTGTAACATCAATGGAACCGAATGAAGGCACT 75
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 370 CTCCGAGATGGATCGTCGCATCAGGGCACTGTAACATCAATGGAACCAAATGAAGGCACT 429
Query 76 TTCGTTCTTCACACTGAAAACACTAAGAAAGGAAAAATCAATCATGTTCATCTTGTTGAT 135
|| |||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 430 TTTGTTCTTCACAGTGAAAATACTAAGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGAT 489
Query 136 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTTGAAGAATTCTTGCCCCAAGCAGCTGCC 195
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 490 GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCC 549
Query 196 ATTGTGTTTGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTAC 255
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ATTGTGTTCGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTAC 609
Query 256 CTATATGATATTTTGACCAATGCGAATGTTGTCAAGAACAAGATTTCAGTCCTCCTTTGC 315
||||| || ||| ||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 610 CTATACGAGATTCTGACCAATGCGAATGTTGTCAAGAAGAAGATTCCAGTCCTCCTTTGC 669
Query 316 TGTAACAAGACAGATAAACTCACTGCACACACCAAGGAGTTTATTCGGAAGCAGATGGAG 375
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 670 TGTAACAAGACCGATAAACTCACTGCACACACCAAGGAGTTTATCCGGAAGCAAATGGAG 729
Query 376 AAAGAAATTGAGAAATTGAGGGCTTCTAGGAGTGCGGTATCTACAGCTGATATAGCGAAC 435
||||||||||||||| |||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 730 AAAGAAATTGAGAAACTGAGGGCTTCAAGGAGTGCAGTCTCTACTGCTGATATAGCGAAT 789
Query 436 GACTTCAGCATTGGAATTGAAGGAGAAGTGTTCTCCTTCTCGCATTGCTACAACAAAGTC 495
||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||
Sbjct 790 GACTTCACCATTGGAATTGAGGGAGAAGTGTTCTCCTTCACGCATTGCTCCAACAAAGTC 849
Query 496 ACTGTAGCTGAGGCATCTGGACTCACCGGAGAAACCGTCCAGATCCAAGACTTCATTCGA 555
||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 850 ACTGTCGCTGAGGCATCTGGACTTACCGGAGAAACCATCCAGATTGAAGACTTCATTCGA 909
Query 556 GAATACATCAAGCCTTTAGCTCAAACGTGCATTAATAGATTGAATCTACGACTAGATTCT 615
|||||||||||||| | ||||| ||| ||| || ||||||||||||||| || || ||||
Sbjct 910 GAATACATCAAGCCATGAGCTCCAACATGCCTTCATAGATTGAATCTACCACAAGTTTCT 969
Query 616 TATGCCTTTGGTCTGTGA 633
||||| ||||| ||||||
Sbjct 970 TATGC-TTTGGGCTGTGA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5