BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894647

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15330.1 | Symbols: ATSPX4, SPX4 | SPX domain gene 4 | chr5:...   196    1e-49


> AT5G15330.1 | Symbols: ATSPX4, SPX4 | SPX domain gene 4 | chr5:4980488-4982231 
FORWARD LENGTH=1252
Length=1252

 Score =  196 bits (106),  Expect = 1e-49
 Identities = 128/137 (93%), Gaps = 7/137 (5%)
 Strand=Plus/Minus

Query  1    GTAAAGTTTCTTCGAGGTGAGTACGAAACTCTTTGCCGAATTTCATGTAGAAAAAGCCTC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  153  GTAAAGTTTCTTCGAGGTGAGTACGAAACTCTTTGCCGAATTTCATGTAGAAAAGGC-TC  95

Query  61   TGTGTTGGATCTAA-TGGAGAAGACGGAGATTGCGACGGTGAAGCAGAGCTGGCTTGGAT  119
            |||||||||||||| ||||||||||||||||||||||||||   ||||||| | | ||||
Sbjct  94   TGTGTTGGATCTAAATGGAGAAGACGGAGATTGCGACGGTG---CAGAGCTCG-T-GGAT  40

Query  120  AAGAACGAACGCGAGAG  136
            |||||||||||||||||
Sbjct  39   AAGAACGAACGCGAGAG  23



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5