BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894670

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27700.1 | Symbols:  | Ribosomal protein S21e  | chr5:980730...  65.8    3e-10


> AT5G27700.1 | Symbols:  | Ribosomal protein S21e  | chr5:9807302-9808506 
REVERSE LENGTH=600
Length=600

 Score = 65.8 bits (35),  Expect = 3e-10
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand=Plus/Minus

Query  37  GAGAGC-AGAGAGGAGAAGCGAAGCAGGTGCGGCAACGGGAG  77
           |||||| |||||||||||||||||||||||||||||| ||||
Sbjct  71  GAGAGCGAGAGAGGAGAAGCGAAGCAGGTGCGGCAACCGGAG  30



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5