BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894721
Length=3576
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27220.1 | Symbols: | Frigida-like protein | chr5:9578757-9... 4732 0.0
> AT5G27220.1 | Symbols: | Frigida-like protein | chr5:9578757-9582752
FORWARD LENGTH=3546
Length=3546
Score = 4732 bits (2562), Expect = 0.0
Identities = 3091/3347 (92%), Gaps = 33/3347 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAATTAAGTTGGAAAACGAGATAAGGCTTTGTGATGTGAAGACAGAGAATCTT 60
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 1 ATGGAGGAAATTAAGTTGGAAAACGAGATAAGGCTTTGTGATGTGAAGGCAAATAATATT 60
Query 61 CGTAAAACAATGGATACGATTAAGTCTCAAGCCTCTGATGTACTTATCTTGAATCTTCAG 120
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CGTAAGACAATGGATATGATTAAGTCTCAAGCCTCTGATGTACTTATCTTGAATCTCCAA 120
Query 121 TGGTGTGATTTAGAGGATCATTTGAAATCAACGAGTGAGAAGGTAGAGTTGAGGTTTAGG 180
||||||||||| ||||| ||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 121 TGGTGTGATTTTGAGGAACATCTGAAATCAGCGAGTGAGAAGTTAGAGTTGAGGTTTAGG 180
Query 181 GAAGTAGTGTCGAAGGAGGTTGAGTTACAGAGTCGAAGTTTTGCTCTTGAAGAAAGGGCT 240
||| |||||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 181 GAACTAGTGTTGAAGGAGGTTGAGTTACAGAATCGAAGCTTTGCTCTTGAAGAAAGGGCT 240
Query 241 AAAGTTGTTGAAGCAGCGGAAGCTGAGATGGGTAATTTAGAAATGAAAGCTAATGGTTTT 300
||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 241 AAAGTGGTTGAAGCAGCGGAAGCTGAGATGGGTGATTTAGAAATGAAAGCTAGTGGTTTT 300
Query 301 AGGAGTGAAGTTGAAGAGAAAAGAGAGGAATTGGGTTTTCTTAGGAAGTCGTTGGAAGAG 360
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 301 AGGAGTGAAGTTGAAGAGAAAAGAGAGGAATTGGGTTGTCTTAGGAAGTCTTTGGAAGAG 360
Query 361 TGTGGTGTTGAGGAAAGGTCAAAGAGAAGTCAACTTAGTGAGATAGTGGAATTATTGAGA 420
||| |||| |||||||||||||||||| |||||||||||||||| ||||| || ||||||
Sbjct 361 TGTAGTGTAGAGGAAAGGTCAAAGAGAGGTCAACTTAGTGAGATTGTGGAGTTGTTGAGA 420
Query 421 AAGACTCAGGTTGATCTTGATTTGAAGGGGGGTGAGTTGCGACAGATGGAGACTGATCTT 480
|||| |||||||||||||||||||||||||| ||||| ||||||||| |||| |||||
Sbjct 421 AAGAGTCAGGTTGATCTTGATTTGAAGGGGGAAGAGTTAAGACAGATGGTGACTCATCTT 480
Query 481 GAGAGATATCGCACTGAGGTCAAGGAAGAGAAGGAGTATTTGCGTAGGACTGAAAATGGT 540
|||||||||||| |||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 481 GAGAGATATCGCGTTGAGGTTAAGGAAGAGAAGGAGCATTTGCGTAGGACTGACAATGGC 540
Query 541 AGGAGAGAGTGGGAAGAGGAGTTAGAGAGAAAGGCGAAAGATCTCACATTGG-TACTGGA 599
|||||||||| |||||| ||| ||||||||||| |||||||||||||||||| || || |
Sbjct 541 AGGAGAGAGTTGGAAGAAGAGATAGAGAGAAAGACGAAAGATCTCACATTGGTTA-TGAA 599
Query 600 T-AAATTAGCGGAATGTGATAAGCGGTTTGAGACACGGTCCTTGGAACTAATAAAGACTC 658
| ||||| | || |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 600 TAAAATT-GTTGATTGTGATAAGCGGATTGAGACACGGTCCTTGGAACTTATAAAGACTC 658
Query 659 AGGGTGAGGTTGAAGTAAAAGAGAAACAGTTAGAGCAGATGAAGATTGATCTTGAGAAAT 718
||||||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 659 AGGGTGAAGTTGAATTAAAAGAGAAGCAGTTAGACCAGATGAAGATTGATCTTGAGAAAT 718
Query 719 ATCGTGTCGAGGTCAACGCAGAGAAGGAGAATTTGGGTAGGACTCAAACTCACAGGAGAG 778
|| |||| || ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 719 ATTGTGTTGATGTCAACGCAGAGAAGAAGAATTTGGGTAGGACTCAAACTCACAGGAGAA 778
Query 779 GATTGGAAGAGGAAATAGAGATAAAGACTAAAGATCTCACATTGGTTATGAATAAAATTG 838
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 779 AATTGGAAGAGGAAATAGAGAGAAAGACTAAAGATCTCACATTGGTTATGGATAAAATTG 838
Query 839 CAGAATGTGAGAAGCTGTTTGAGACACGGTCCTCAGAACTAATAAAGACTCAGGGTGAGG 898
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 839 CAGAATGTGAGAAGCTGTTTGAGAGACGGTCCTTAGAACTAATAAAGACTCAGGGTGAGG 898
Query 899 TTGAATTGAAAGGGAAACAGTTAGAGCAGATGGATATTGATCTTGAGAGGCATCGTGGTG 958
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGAATTGAAGGGGAAACAATTAGAGCAGATGGATATTGATCTTGAGAGGCATCGTGGTG 958
Query 959 AGGTCAGCGCAGAGATGGAGCATCTGGAAAATAGCCAAACTCGCAGTAGAGAATTGGCAC 1018
|||||| || || |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 959 AGGTCAACGTAGTGATGGAGCATCTGGAAAAGAGTCAAACTCGCAGTAGAGAATTGGCAG 1018
Query 1019 AGGAAATA-AAGAGAAAGAGGAAAGAGCTTACAGCGGTTCTCGATAAAATTGCAGAGTAT 1077
|||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 AGGAAATAGAA-AGAAAGAGGAAAGAGCTTACAGCGGTTCTCGATAAAACTGCAGAGTAT 1077
Query 1078 GGGAAGCA-GCTTGAGTCGGTGGAACAACAACTAGCTTCT-CAGCAGAAGCTGCTTGAGA 1135
|||||| | | |||||| ||||||| || ||||||||| | ||||||||||||||||| |
Sbjct 1078 GGGAAG-ACGATTGAGTTGGTGGAAGAAGAACTAGCTT-TGCAGCAGAAGCTGCTTGATA 1135
Query 1136 CACGGTCCTCGGAACTTGTTTCTAAAAAGAAAGAGTTGGACGGACTGAGTCTGGACCTTG 1195
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1136 TACGGTCCTCGGAACTTGTTTCTAAAAAGAAAGAGTTGGACGGACTTAGTTTGGACCTTG 1195
Query 1196 ACTTGGCCAACTCACTAAATAACGAGATT-AGGGAGACATG-TAAACAGATTAAATCAAA 1253
| |||| |||||||||||||||||| || | ||||||| | | ||| |||| |||||||
Sbjct 1196 AGTTGGTTAACTCACTAAATAACGAG-TTGAAGGAGACA-GTTCAACGGATTGAATCAAA 1253
Query 1254 GGGT-AGGAAGTTGGAGGAGATTGAAAGGCTGATTCAGGAACGGAGTGGTCACAGTGAAT 1312
||| ||| |||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 1254 AGGTAAGG-AGTTGGAGGACATGGAAAGGCTGATTCAGGAACGGAGTGGTCACAATGAAT 1312
Query 1313 CAATCAAGTTGCTGCTCGAGGAACACAGTGAAGAACTTGCT-TCTAAAGAAGAGAGACAC 1371
|||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1313 CAATCAAGTTACTACTCGAGGAACACAGTGAAGAACTTGCTAT-TAAAGAAGAGAGACAC 1371
Query 1372 AATGAGATAACGGAGGCTATTCGTAAACTATCCTCGGAGATTGTCTCTAAAGAGAAAACT 1431
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1372 AATGAGATAGCGGAGGCTGTTCGTAAACTATCCTTGGAGATTGTCTCTAAAGAGAAAACT 1431
Query 1432 ATCCAGCAACTCTCTGAGAAACAAC-TTGTAAAACAGAAAAAACTGGATTCGACTGAAAA 1490
||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||
Sbjct 1432 ATCCAGCAACTCTCTGAGAAACAACATT-CAAAACAGACAAAACTGGATTCGACAGAAAA 1490
Query 1491 ACGTCTAGAA-AATACCACTGCAGAATTTGTTAT-AAAGGAAAAAGAACTTGGCTCTGTG 1548
| || ||||| || |||||||||||||| ||| | ||||||||| |||||| ||||||||
Sbjct 1491 ATGTTTAGAAGAA-ACCACTGCAGAATTGGTT-TCAAAGGAAAATGAACTTTGCTCTGTG 1548
Query 1549 AAAGATACATA-CAGAGAGTGCCTCCAAAACTGGGAAATCAAAGAGAAAGAGTTAAAGTC 1607
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1549 AAAGATACATATC-GAGAGTGCCTCCAAAACTGGGAAATCAAAGAGAAGGAGTTAAAGTC 1607
Query 1608 CTTACAAGAAGAGATTAAAAAGATTCAAGACAGCTTGAAAGACTTTCAATCTAAAGAGGC 1667
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 CTTCCAAGAAGAGGTTAAAAAGATTCAAGACAGCTTGAAAGACTTTCAATCTAAAGAGGC 1667
Query 1668 TGAGCAAGTCAAATTGAAAGCATCATTGATGGAACGTGAGAAAGAACTTGGACTGAAGGA 1727
|||| |||||||| |||| |||||||| ||||| |||||||||||||||||||||| |
Sbjct 1668 GGAGCTTGTCAAATTAAAAGAATCATTGACGGAACATGAGAAAGAACTTGGACTGAAGAA 1727
Query 1728 GAAGCGAATTCGTGCCCGTTCAGAAAAGATTGAGCTGAAAGAGAAAAAGCTTGATGCTCG 1787
||||| ||||| || || |||||||||||||| ||||||| || ||||||||||||||
Sbjct 1728 GAAGCAAATTCATGTTCGCTCAGAAAAGATTGAATTGAAAGATAAGAAGCTTGATGCTCG 1787
Query 1788 CGAAGAAAGGATT-GATAAAAAAGATGAGCAACTGAAATCCACAGAACTAAAGTTGGCTA 1846
|| |||||| || ||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1788 GGAGGAAAGG-TTGGATAAAAAAGATGAGCAACTGAAATCCGCAGAACAAAAGTTGGCTA 1846
Query 1847 AATGTGTTAAGGATTATGAGCTGAATGCAAAGAAGTTGGCCAGCTTTTGTCAACAAAACA 1906
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1847 AATGTGTTAAGGAATATGAGCTGAATGCAAAGAAATTGGCCAGCTTTTGTCAACAAAACA 1906
Query 1907 ACCCGGATCAACAAGTTGACTTGGTGCGAGACGCTAGTGTATGTGATGAGAAAACTTTGC 1966
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1907 ACCCGGATCAACAAGTTGACTTGGTGCGAGACGCTAGTGTATGTGACGAGAAAACTTTGC 1966
Query 1967 AGTTACTCTTACGTGGGCATCTGAAGAAATGTGATCAGCTTCACCTTGATGTTCTGGGTG 2026
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1967 AGTTACTCTTACGTGGGCATCTGAAGAAATGTGATCAGCTTCACCTCGATGTTCTGCGTG 2026
Query 2027 CTCTAAAAGCATCTTCTGACCCAGCAAAGCTTGTGTTAGACACAATACAAGGGCTTCATG 2086
|||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||| |
Sbjct 2027 CTCTAAAAGCATCTTCTGACCCGGCAAAGCTTGTGTTAAACACAATACAACGTCTTCACG 2086
Query 2087 AAAGGATGGCAGTAACAAAGCTTGATCCAGATAGTGTTAGAAGGAGTAGTATTTGCTTGC 2146
||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2087 AAAAGATGGCAGTAACAAAGCTTGATCCAGATAGTGTAAGAAGGGGTAGTATTTGCTTGC 2146
Query 2147 TGGAATGCTTAATGAATATGTCACAAGAGCCCAAGACTGAAGTACAAGTAGAAGCTATCA 2206
||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2147 TGGAATGTTTAATGGATATGTCACCAGAGCCCAAGACTGAAGTACAAGTAGAAGCTATCA 2206
Query 2207 AATCAGCCACTGAATGGAAGAATACAACACTGGTTAAGGCAGAGAATCCAGTGGAGGTTT 2266
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2207 AATCAGTCACTGAATGGAAGAACACAACATTGGTTAAGGCAGAGAATCCAGTGGAGGTTT 2266
Query 2267 TGGGTTTTCTGCACTTTCTAGCTGCATTCAGTTTGGCATACACTTTTGATGCCGACAAAG 2326
|||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2267 TGGGTTTTCTCCACTTTCTATCTGCATTCAGTTTGGCCTACACTTTTGATGCCGACAAAG 2326
Query 2327 TCCAAGATCTGTTTGATGCCGCCTTTCTTCGCCAATACGCTCCAAGTCTGTGTGAGGCTC 2386
||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2327 TCCAAAATCTGTTTGATGCCGCCTTTCTTCGCCAATACGCTCCGAGTCTATGTGAGGCTC 2386
Query 2387 TAGGAGTATCATCTCTAGCACCTGTCAACAATGTACTGTTATTGGATGATAAGCCTGAAC 2446
||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 2387 TAGGAGTATCATCTCTAGCACCTGTCAACAATGTACTATCATTGGACGATAAGCCTGAAC 2446
Query 2447 AGCAGCCCCCTGAAGCA--A-TCAGAAATAGCAGTGATTCTCGCAGCCCGGATGTCCAAG 2503
||||||||||||||||| | ||| |||||||||||||||||||||| || |||||||||
Sbjct 2447 AGCAGCCCCCTGAAGCACCAATCATAAATAGCAGTGATTCTCGCAGCACGAATGTCCAAG 2506
Query 2504 AAACCATAGCATCACCTCATTTGGGTAATGAAGATGTTCTTTTGGACCCTGAGGGCTCAG 2563
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2507 AAACCATAGCATCATCTCATTTGGGTAATGTAGATGTTCTTTTGGACCCTGAGGGCTCAA 2566
Query 2564 CTTCCTTTTCACCCAACGAGGTCTTTACTGGACTTCAAGGTATGAAAGATCCAGCCACAT 2623
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |
Sbjct 2567 CTTCCTTTTCACCCAATGAGGTCTTTACTGGACTTCAAGGTATGATAGATCCAGCCTCGT 2626
Query 2624 ATGTTCTAAATTTTGTCAACGATGAACTCATGGGTGCTCAACAGAGAGGAGAGTTGGGTT 2683
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2627 ATGTTCTAAATGTTGTCAACGATGAACTCTTGGGTGCTCAACAGAGAGGAGAGTTGGGTT 2686
Query 2684 TAGCAGAGCCTGTAGTTAAGACTTTGATTCCCCTTTTGGAGGAGCTGCCACGTGTTGTAA 2743
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2687 TAGCAGAGCCTGTAATTAAGACTTTGATTCCCCTTTTGGAGGAGCTACCACGTGTTGTAA 2746
Query 2744 GATCTAGCAAACATGTACTGTCAGATGCACTACAAGTGGCAAATCTATGGAGCTGGATGA 2803
||||||||||||| | || |||||||||||||||||||||| || ||||||||||||||
Sbjct 2747 AATCTAGCAAACATCTTCTTTCAGATGCACTACAAGTGGCAACTCGATGGAGCTGGATGA 2806
Query 2804 TGGGAAATAGTACTCAAATGTTATCTCTTGAGGCTTGGGGTTTTCTGCAACTCATCGTGG 2863
||||||||||||||||||||| | | |||||||||||||||||||| ||||| || ||||
Sbjct 2807 TGGGAAATAGTACTCAAATGTCACCGCTTGAGGCTTGGGGTTTTCTCCAACTTATTGTGG 2866
Query 2864 CATATGGGTTGGTGCATGCAACCAGTCGAGAAAATACTTTACGATTTGCTTCATATGTTG 2923
||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 2867 CATATGGATTGGTGCATGCAACCAGTCAAGATAATACTTTACGATTTGCCTCATATGTTG 2926
Query 2924 CTCACTTCAAACAGGCTCCGAAACTCTTTGAATCTCTTGGTCTTAGTTGTGCCATCCCAA 2983
||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 2927 CTCACTTTAAACAAGCTCCGAAACTCTTTGAATCTCTTGGTCTCAGTTATGCCATGCCAA 2986
Query 2984 A-CGTGGTTAAACAACTCCTAGACGAACGCCATTATTTTATGGCTATCCGGTTTATCCTC 3042
| | |||||||| |||||||||| ||||||||||| |||||||| |||||||||||| |
Sbjct 2987 ATC-TGGTTAAAAAACTCCTAGATGAACGCCATTACTTTATGGCAATCCGGTTTATCTTT 3045
Query 3043 TATTTCAAGCTGAAGTCCAACTTTTCTCCCCTGGAATTATTGAAAGATGAGATCGTCAAT 3102
|| ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 3046 TACTTCAAGCTGAAGTTCAACTTTTCTCCCCTGGAATTATTGAAAGACGAGATCATCACT 3105
Query 3103 CTTAGAGTTTCTGCCAAGGAAGAGAGGAGATTTGATTCACAGGCTGAAGACAGAGATGCT 3162
|||||||| ||| |||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 3106 CTTAGAGTCTCTACCAAGGAAAAGAGAAGACTTGATTCACAGGCTGAAGACAGAGATGCT 3165
Query 3163 GCAAAACTGAAAGACATAATTGAAATCATCGAAGACTTCAAGCTGGATATAGATCTTCCT 3222
||||||||||||||||| || ||| | || |||||||||||||||||||| |||||||||
Sbjct 3166 GCAAAACTGAAAGACATTATAGAACTTATTGAAGACTTCAAGCTGGATATTGATCTTCCT 3225
Query 3223 GTGGACCTTATCGTCAAATTCATGGTTCCACGGGAAATTCAAAATCAGAACCAATATGTG 3282
||||| ||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||
Sbjct 3226 GTGGAACTTATCGTCAAGTTCATGGTTCCGCGGGAAAATCAAAATGAGAACCAATATGTC 3285
Query 3283 GTCTCATCATTTGTCCCAGTTCAACCTCCGCAGGTTCATATGCAGGC 3329
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3286 GTCTCATCATTTGTCCCAGTTCAATCTCCGCAGGTTCATATGCAGGC 3332
Score = 329 bits (178), Expect = 9e-89
Identities = 358/446 (80%), Gaps = 8/446 (2%)
Strand=Plus/Plus
Query 651 AAAGACTCAGGGTGAGGTTGAAGTAAAAGAGAAACAGTT-AGAGCAGATGAAGATTGATC 709
||||| ||||| ||| |||| | || | | || |||| ||| |||||| || | |||
Sbjct 420 AAAGAGTCAGGTTGATCTTGATTTGAAGGGGGAAGAGTTAAGA-CAGATGGTGACTCATC 478
Query 710 TTGAGAAATATCGTGTCGAGGTCAACGCAGAGAAGGAGAATTTGGGTAGGACTCA-AACT 768
|||||| |||||| || ||||| || | |||||||||| ||||| |||||||| | || |
Sbjct 479 TTGAGAGATATCGCGTTGAGGTTAAGGAAGAGAAGGAGCATTTGCGTAGGACTGACAA-T 537
Query 769 CACAGGAGAGGA-TTGGAAGAGGAAATAGAGATAAAGACTAAAGATCTCACATTGGTTAT 827
||||||| || |||||||| || ||||||| |||||| ||||||||||||||||||||
Sbjct 538 GGCAGGAGA-GAGTTGGAAGAAGAGATAGAGAGAAAGACGAAAGATCTCACATTGGTTAT 596
Query 828 GAATAAAATTGCAGAATGTGAGAAGCTGTTTGAGACACGGTCCTCAGAACTAATAAAGAC 887
||||||||||| || ||||| |||| | ||||||||||||||| ||||| ||||||||
Sbjct 597 GAATAAAATTGTTGATTGTGATAAGCGGATTGAGACACGGTCCTTGGAACTTATAAAGAC 656
Query 888 TCAGGGTGAGGTTGAATTGAAAGGGAAACAGTTAGAGCAGATGGATATTGATCTTGAGAG 947
||||||||| |||||||| |||| ||| |||||||| |||||| | |||||||||||||
Sbjct 657 TCAGGGTGAAGTTGAATTAAAAGAGAAGCAGTTAGACCAGATGAAGATTGATCTTGAGAA 716
Query 948 GCATCGTGGTGAGGTCAGCGCAGAGATGGAGCATCTGGAAAATAGC-CAAACTCGCAGTA 1006
|| ||| ||| |||| |||||||| | || || ||| | | | ||||||| ||| |
Sbjct 717 ATATTGTGTTGATGTCAACGCAGAGAAGAAGAATTTGGGTAGGA-CTCAAACTCACAGGA 775
Query 1007 GAGAATTGGCACAGGAAATAAAGAGAAAGAGGAAAGAGCTTACAGCGGTTCTCGATAAAA 1066
|| |||||| | |||||||| ||||||||| ||||| || ||| |||| | |||||||
Sbjct 776 GAAAATTGGAAGAGGAAATAGAGAGAAAGACTAAAGATCTCACATTGGTTATGGATAAAA 835
Query 1067 TTGCAGAGTATGGGAAGCAGCTTGAG 1092
||||||| | || ||||| | |||||
Sbjct 836 TTGCAGAATGTGAGAAGCTGTTTGAG 861
Score = 281 bits (152), Expect = 3e-74
Identities = 193/213 (91%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 3365 CTCATGGCTCAAACCCGACCTTTCCAACAATCCTTGGTGCATCACCAAATCAACAAGTCC 3424
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||
Sbjct 3335 CTCATGGCTCAAACCCGACCTTTCCAACAAGCCTTGGTACATCACCAAATCAACAGGTCC 3394
Query 3425 TAGACATGGAAACATATCAAGCTGGTGGTTCAA-CTGTGTTCCATGGTCAACCTTCACAC 3483
||||| |||||||||||||||| |||||||||| | | |||||| | |||| ||||||||
Sbjct 3395 TAGACTTGGAAACATATCAAGCCGGTGGTTCAATC-GCGTTCCAAGCTCAATCTTCACAC 3453
Query 3484 CAGGCTGGTTTCAAACGCCCAAGGATGGATCCTTCAGTTTCTAGACCTGTGATTAGACCT 3543
|| | |||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 3454 CATACAGGTTACAAACGAACAAGGATGGATCCTTCGGTTTCTAGACCTGTGATTAGACCG 3513
Query 3544 TGCTTCAATCCATCAAGCTATGGCAGATTCTAG 3576
|||||||||||||||||||||||||||| ||||
Sbjct 3514 TGCTTCAATCCATCAAGCTATGGCAGATACTAG 3546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 178042480707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5