BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894730

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24370.1 | Symbols:  | transposable element gene | chr1:8643...   540    4e-153


> AT1G24370.1 | Symbols:  | transposable element gene | chr1:8643761-8645626 
REVERSE LENGTH=1242
Length=1242

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 350/377 (93%), Gaps = 7/377 (2%)
 Strand=Plus/Plus

Query  1     ATGCCTGAGTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGCTG-AGTAGTTATGA  59
             |||| ||| |||||||||||||||||||||||||||||||||||| || | || ||||||
Sbjct  868   ATGCTTGACTGGCCCCCAGAGAATCCTTTTGAACATTCAAAGCTGTTGAATTA-TTATGA  926

Query  60    GCTGC---AAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGTTTCCACGACTAA  116
             |||||   ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct  927   GCTGCAAGAAGACAATGACTGGATTCGTCTCTACTTGGAACTTGCAGTTGCCACCACTAA  986

Query  117   TAGGGGCACCGTTATGGTTCATGATGATCTGTCCAACCTGATGATTGTCCAAGTGGTTAT  176
             |||||||||| ||| || || |||||| ||||||||| ||| |||| ||||||||| |||
Sbjct  987   TAGGGGCACCATTAGGGATCTTGATGACCTGTCCAACTTGAAGATTATCCAAGTGGCTAT  1046

Query  177   AGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACAAATTTTGCAATTGTCTA  236
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1047  AGATACTACTCCCCAAGATGTGGATTTGGTATTCAACCGCACATATTTTGCAATTGTCTA  1106

Query  237   CATA-ATGTACAAGGACTCGTGTGAGGCTCGAGTTGGTAAGGATGTTGATCGCGTAGCTA  295
             |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1107  CATACA-GTACAAGGACTCGTGCGAGGCTCGAGTTGGTAAGGATGTTGATCGCGTAGCTA  1165

Query  296   TAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGGCAAGACTCTGA  355
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1166  TAGTCAGAAGAGCCTTCGATGAGCAGCGGGGATGCTTCAGTCTTGTGGGCAAGACTCTAA  1225

Query  356   GTTTACCAAAAGAGTGA  372
             | || ||||||||||||
Sbjct  1226  GATTGCCAAAAGAGTGA  1242



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5