BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894745
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10730.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 318 1e-86
> AT5G10730.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:3390614-3393178 REVERSE LENGTH=1303
Length=1303
Score = 318 bits (172), Expect = 1e-86
Identities = 202/216 (94%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 59 TACAGGTTTGTTTTCTGTCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCTTAACAAAA 118
||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 284 TAC-GGTTTG-TTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCT-AACAAAA 340
Query 119 TTGATGAGCCATTCAATGTGGAAGAAGTTGAGTCTGTACATGTGCCTCCAACTCCAACTG 178
|||||||||| |||||||||||||||| |||| ||||||||||||||||| |||| ||||
Sbjct 341 TTGATGAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCACCTCCTACTG 400
Query 179 AGAAGCTGCTTGTCCTGGGTGGAAATGGTTTTGTGGGATCACACATATGTAAAGAAGCTT 238
||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 401 AGAAGCTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGTAAAGAAGCTT 460
Query 239 TAGATCGCGGCTTATCGGTCTCTAGCCTTAGCAGGT 274
|||||||||||||||| |||||||||||||||||||
Sbjct 461 TAGATCGCGGCTTATCTGTCTCTAGCCTTAGCAGGT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12667472748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5