BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894754
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203... 833 0.0
AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284... 540 7e-153
AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:... 322 3e-87
> AT1G65150.1 | Symbols: | TRAF-like family protein | chr1:24203841-24205775
REVERSE LENGTH=1312
Length=1312
Score = 833 bits (451), Expect = 0.0
Identities = 581/643 (90%), Gaps = 11/643 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGGGGGCTTTGTTTCAATGTATGTGGAATGTCTCTCATCCACAACACCACTCATT 60
||||||| ||| ||||| || |||||||||||||| |||||||| |||||||||| ||||
Sbjct 271 ATGGAAGTGGG-TTTGTGTCTATGTATGTGGAATGCCTCTCATCGACAACACCACCCATT 329
Query 61 GACGTGTTTG-CTCATCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTC 119
|| ||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 330 GATGTGTTTGCCT-ATCTCACTTTCTTTGTCTTCAGCGAGGAAGAGAAGAAGTACCTCTC 388
Query 120 TATTCAAGATGTTGAAGTAAAGCGTTTCAATTCTGCTAAAACGGTTTGGGGATTGTCAAA 179
| |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 389 TTTTCAAGATGTTGAAGTGAAGCGTTTCAATTCTTCAAAAACGGTTTGGGGATTGTCAAA 448
Query 180 AGCTCTTTCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGAGAACT 239
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 449 AGCTCTTCCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGTGAAGA 508
Query 240 ACATGAGTTTGGTGCTCATGTGAAGATTGTTTCACGACCTGTCTCTTTTGGTGAAGATCT 299
||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 509 ACATGAGTTCGGTGCTCATGTGAAGATTGTTTCACGACCCGCCTCTTTTGGTGAAGATCT 568
Query 300 CCCTTTTCACAAATTCTCATGGACTATTTGTGATTTCTCTCTTCTCAGA-CAGAATGATT 358
|||||||||||||||||| ||||||||| |||||||| ||||||| || ||||||||||
Sbjct 569 CCCTTTTCACAAATTCTCTTGGACTATTCGTGATTTCGCTCTTCTG-GAACAGAATGATT 627
Query 359 GCGTTTCGAAAACCTTTCACATGGGAGAAAAGGATTGGACTCTGACTTTGTATCCAAAGG 418
||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 628 ACGTATCCAAAACCTTTCACATGGGAGAAAAGGATTGGACTCTAAAGTTGTATCCAAAGG 687
Query 419 GGGACTCTAGAG-CAGATGGCAAGTTA-TCCCAGCATTTGCATTTAGCCGACGGTGAAAC 476
|||||||| ||| |||||| ||||||| | | |||||||||||||||| |||||||||||
Sbjct 688 GGGACTCT-GAGGCAGATGACAAGTTAATTC-AGCATTTGCATTTAGCTGACGGTGAAAC 745
Query 477 TTTATTCAGGGGTGAGCTGATTTTCGTTCGAGTAAACCTGCAGGTTCTAGACCCGCGTGG 536
|||| || |||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 746 TTTAGCCAAGGGTGAGCTGATTTTCGTGCGAGTAAACCTGAAGGTTCTAGACCCGCGTGG 805
Query 537 ATCCGATCACCTAATAGGAAGCATTAACGGTTGGGTCATGGCCTCGACCAAAGCGATGGG 596
|||| ||||||||| ||||||| ||||| ||||| ||||| ||||| ||||||| ||||
Sbjct 806 ATCCAATCACCTAACAGGAAGCCTTAACTGTTGGCTCATGAACTCGAACAAAGCG-TGGG 864
Query 597 -TCTTCCTCAATTCATGCCTTTAGCTAAAATTCAGGGGGCTTA 638
||||||||||| |||| |||| | ||||| | ||||||||||
Sbjct 865 GTCTTCCTCAATCCATGTCTTTCGATAAAAATGAGGGGGCTTA 907
> AT1G65370.1 | Symbols: | TRAF-like family protein | chr1:24284469-24286145
REVERSE LENGTH=1190
Length=1190
Score = 540 bits (292), Expect = 7e-153
Identities = 535/650 (82%), Gaps = 25/650 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGGGGGCTTTGTTTCAATGTATGTGGAATGTCTCTCATCCACAACACCACTCATT 60
|||||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct 249 ATGGAA-AGGGCTTTGTGTCTATGTATGTGGAATGTCTCTCATCCACAACACCACCCATT 307
Query 61 GACGTGTTTGCTCATCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTCT 120
|| ||||||| | ||||| ||||||||||||||| | || |||| || |||||||||||
Sbjct 308 GATGTGTTTGATTATCTCTCTTTCTTTGTCTTTAACAAGAAAGACAACAAGTACCTCTCA 367
Query 121 ATTCAAGATGTTGAAGTAAAGCGTTTCAATTCTGCTAAAACGGTTTGGGGATTGTCAAAA 180
|| |||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||
Sbjct 368 ATCCAAGATGTTGAAGTTAAGCGTTTCAGTTCTTCTAAAACGGTTTGGGGATTGCCAAAA 427
Query 181 GCTCTTTCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGTACGGAGAACTA 240
||| | ||| |||||||| ||| |||| |||||||||||||||| || | ||||||| |
Sbjct 428 GCTATGTCGCTTGAAACATTCACTGACCCTGCAAAGGGATTTATCGTGGAAGGAGAACCA 487
Query 241 CATGAGTTTGGTGCTCATGTGAAGATTGTTTCA-CGACCTGTCTCTTTTGGTGAAGA-TC 298
|||||||||||||||||||||||||| |||| | ||| ||| || ||| ||| || ||
Sbjct 488 TGTGAGTTTGGTGCTCATGTGAAGATTGCTTCATC-ACCCGTCCCTGTTGATGA-GAATC 545
Query 299 TCCCTTTTCACAAATTCTCATGGA-CTATTTGTGATTTCTCTCTTCTCAGACAGAATGAT 357
||||||||||||||||||| |||| | ||| ||||||||||| |||| | ||||||||||
Sbjct 546 TCCCTTTTCACAAATTCTCTTGGAGC-ATTCGTGATTTCTCTGTTCTGAAACAGAATGAT 604
Query 358 TGCGTTTCGAAAACCTTT-CACATGGGAGAAAAGGATTGGACTCTGACTTTGTATCCAAA 416
||| | || ||||||||| || ||||||| |||| |||||||||| ||| ||||||||||
Sbjct 605 TGCATATCTAAAACCTTTGCA-ATGGGAGGAAAGAATTGGACTCTAACTGTGTATCCAAA 663
Query 417 GGGGGACTCTAGAG-CAGATGGCAAGTTATCCCAGCATTTGCATTTAGCCGACGGTGAAA 475
||| |||||| ||| ||||| | |||| | | || | ||||||||||| |||||||||
Sbjct 664 GGGAGACTCT-GAGGCAGATAACGAGTTCTGCAAGTACTTGCATTTAGCTGACGGTGAAG 722
Query 476 -CTTTATT-CAGGGGTGAGCTGATTTTCGTTCGAGTA-AACCTGCAGG--TTCTAGACCC 530
||| || | || |||| |||||| ||| |||| | ||| | ||| || |||||||
Sbjct 723 TCTT-ATCGCCTGG-TGAGATGATTTCCGTGCGAGCACAAC-TA-AGGGCTT-TAGACCC 777
Query 531 GCGTGGATCCGATCACCTAATAGGAAG-CATT-AACGGTTGGGTCATGGCCTCGACCAAA 588
|||||||||| | ||| || || | | || ||| | || ||||||| ||||||||
Sbjct 778 GCGTGGATCCAAACACAAAACAGTCTGGC-TTCAACAAT-GGATCATGGCAGCGACCAAA 835
Query 589 GCGATGGGTCTTCCTCAATTCATGCCTTTAGCTAAAATTCAGGGGGCTTA 638
|||| |||| ||||||||| | || |||||||| | |||||| ||||||
Sbjct 836 GCGAGGGGTATTCCTCAATCCTTGTCTTTAGCTGATCTTCAGGAGGCTTA 885
> AT1G65050.1 | Symbols: | TRAF-like superfamily protein | chr1:24164286-24165679
REVERSE LENGTH=687
Length=687
Score = 322 bits (174), Expect = 3e-87
Identities = 213/231 (92%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGGGGGCTTTGTTTCAATGTATGTGGAATGTCTCTCATCCACAACACCACTCATT 60
|||||| |||||||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 176 ATGGAA-GGGGCTTTGTTTCAATGTATGTGGAATGCCTCTCATCGACAACACCACCCATT 234
Query 61 GACGTGTTTGCTC-ATCTCACTTTCTTTGTCTTTAGCGAGGAAGAGAAGAAGTACCTCTC 119
|| ||||||| || ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 235 GATGTGTTTG-TCTATCTCACTTTCTTTGTCTTTAGCGAAGAAGAGAAGAGGTACCTCTC 293
Query 120 TATTCAAGATGTTGAAGTAAAGCGTTTCAATT-CTGCTAAAACGGTTTGGGGATTGTCAA 178
|||||||||||||||||| ||| | ||||||| || | |||||||||||||||||||||
Sbjct 294 TATTCAAGATGTTGAAGTTAAGAGGTTCAATTCCT-CAAAAACGGTTTGGGGATTGTCAC 352
Query 179 AAGCTCTTTCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGT 229
||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AAGTTCTTCCGGTTGAAACACTCAAAGACCGTGCAAAGGGATTTATCTTGT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5