BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894779
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28470.1 | Symbols: | Major facilitator superfamily protein... 2531 0.0
> AT5G28470.1 | Symbols: | Major facilitator superfamily protein
| chr5:10429801-10432357 FORWARD LENGTH=1692
Length=1692
Score = 2531 bits (1370), Expect = 0.0
Identities = 1581/1685 (94%), Gaps = 6/1685 (0%)
Strand=Plus/Plus
Query 1 ATGGACGTTGAATCTTCATCTCCATCGTCACATGCTCTTATTAAGAAGGAGAAAGGAGGA 60
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 13 ATGGACGTCGAATCTTCATCACCATCGTCACATGCTCTTATTAAGAAGGAGAAAGGAGGA 72
Query 61 TGGAGAGCTATCAAGTACATTATTGCCAATGAGTCGTTTGAGAAGCTGGCGTCGATGAGC 120
|||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||
Sbjct 73 TGGAGAGCTATCAAGTACATTATTGCAAACGAGTCTTTTGAGAAGCTGGCCTCAATGAGC 132
Query 121 TTGATTGGGAATTTATCGGTGTATCTCACGACAAAATACAATCTTGGTGGTGTTTTCTTG 180
|| ||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 133 TTAATTGGGAATCTATCGGTGTATCTCATGACAAAATATAATCTTGGTGGTGTCTTCTTG 192
Query 181 GTGAACGTCATCAACATCTGGTTTGGTTCTTGCAACGTTCTTACTCTCGCAGGTGCTTTT 240
||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 193 GTGAACGTCATCAACATATGGTTTGGTTCTTGCAACATTCTTACACTCGCTGGTGCTTTT 252
Query 241 GTCTCCGATGCTTACCTCGGAAGATTTTGGACTCTTCTCCTCGGTTCCATTGCCTCCTTT 300
||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 253 GTCTCTGATGCTTACCTTGGAAGATTTTGGACTCTTCTACTCGGTTCCATCGCCTCCTTT 312
Query 301 ATCGGAATGGGAATAATTGCTCTAACCGCGGCTCTCCCGCGATTAAGACCTGAGGCTTGC 360
|| |||||||||||| ||||||||||||| ||||||||| | ||||||||||| ||||||
Sbjct 313 ATAGGAATGGGAATATTTGCTCTAACCGCTGCTCTCCCGAGTTTAAGACCTGATGCTTGC 372
Query 361 ATCGATCCATCGAATTGTTCAAACCAGCCCGCGAAATGGCAGCTTGGGGTTCTATTCTCC 420
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 373 ATTGATCCATCGAATTGTTCAAACCAGCCGGCGAAATGGCAGCTCGGGGTTCTATTCTCC 432
Query 421 GGTCTAGGTTTACTAGCCATTGGTGCAGGAGGAATAAGACCATGCAATATCGCATTTGGA 480
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 433 GGTCTAGGTTTACTAGCCATTGGAGCAGGAGGAGTAAGACCATGCAATATCGCATTTGGA 492
Query 481 GCTGATCAATTCGATACAAGCACTAAAAAAGGCAAAGCCCAGCTTGAAACATTCTTTAAC 540
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 493 GCTGATCAATTCGATACAAGCACTAAAAAGGGCAAAGCTCACCTTGAAACATTCTTTAAC 552
Query 541 TGGTGGTACTTCTCCTTCACGGTGGCTCTAGTCATTGCATTGACAGGTGTCGTCTATATA 600
|||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||||||
Sbjct 553 TGGTGGTACTTCTCTTTCACCGTGGCTCTAGTTATTGCACTGACAGGTGTTGTCTATATA 612
Query 601 CAAACTAACATCAGTTGGGTCATTGGTTTCGTGATCCCCACGGCTTGTCTTGCACTCTCC 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CAGACTAACATCAGTTGGGTCATTGGTTTCGTGATCCCCACGGCTTGTCTTGCACTCTCC 672
Query 661 ATCACCACCTTCCTCATTGGTCAGCATACTTACATATGTGCAAAACCTGAGGGCAGTGTG 720
||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 673 ATCACAACCTTCGTCATTGGTCAGCATACTTACATATGTGCAAAAGCTGAGGGCAGTGTG 732
Query 721 TTCGCAGACATAGTTAAGGTTGTTGCCGCGGCTTGTAAGAAACGTAAGTTGAAATCTGGA 780
|||||||||||||||||||||||| | |||||||| |||||||||||| ||||| |||||
Sbjct 733 TTCGCAGACATAGTTAAGGTTGTTACTGCGGCTTGCAAGAAACGTAAGGTGAAACCTGGA 792
Query 781 TCAGATATAATGTTCTACATAGGCCCTTCTAATGATGGATCACCCACCACTTTGGTCCGA 840
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TCAGATATAACGTTCTATATAGGCCCTTCTAATGATGGATCACCCACCACTTTGGTCCGA 852
Query 841 GACAAACAAAGGTTAAGGTTTTTTGACAAAGCATCGGTGGTAACTAATCCGAACGAGTTA 900
|||||||| || |||||||| |||||||||||||| | ||||| |||||||||||||||
Sbjct 853 GACAAACACAGATTAAGGTTCTTTGACAAAGCATCTATCGTAACGAATCCGAACGAGTTA 912
Query 901 AACGAAGAAGGTAATGCGAAGTACAAATGGAGATTATGTAGTGTGCAGCAGGTGAAAAAC 960
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AACGAAGACGGTAACGCGAAGTACAAATGGAGATTATGTAGTGTGCAGCAGGTGAAAAAC 972
Query 961 CTCAAGTGTGTGACCGCAATTTTACCAGTTTGGGTCACGGGAATCGCGTGTTTCATACTG 1020
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CTCAAGTGTGTGACAGCAATTTTACCAGTTTGGGTCACGGGAATCGCGTGTTTCATACTG 1032
Query 1021 ACTGACCAACAAAACATTTACGGGATCCTTCAAGCAATGCAGATGGATAAAACGTTCGGA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1033 ACTGACCAACAAAACATTTACGGGATCCTTCAAGCAATGCAGATGGATAAAACGTTTGGA 1092
Query 1081 CGACATAATTTCCAAGTCCCAGCAGGATGGATGAATCTCGTCTCTATGATCACTCTCGCG 1140
| |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1093 CCACATAACTTCCAAGTCCCGGCAGGATGGATGAATCTCGTCTCCATGATCACTCTAGCG 1152
Query 1141 ATTTGGATCTCACTTTACGAGTGCGTTATCATACCAATAGTGAAACAAATCACAGGACGG 1200
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 1153 ATTTGGATCTCACTTTACGAGTGTGTTATCATACCAATAGTGAAACAAATCACGGGTCGG 1212
Query 1201 AAAAAACGGTTGACGATGAAACAAAGAATCGAGATAGGTATCGTAATGGGAATCGCTTGT 1260
||||||||||| ||| | ||||| ||||||||||||| || | |||||||| ||||
Sbjct 1213 AAAAAACGGTTAACGTTAAAACATAGAATCGAGATAG-TA----A-TGGGAATCATTTGT 1266
Query 1261 ATGATTGTCGCGGCTTTCCAAGAGAAGAAGCGAAGAGCCTCCGCTCTAAAGAATGGCTCA 1320
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1267 ATGATTGTCGCGGGTTTCCAAGAGAAGAAGCGAAGAGCATCCGCTCTAAAGAATGGCTCA 1326
Query 1321 TTCGTATCGCCCATTTCTATTGTAATGCTCCTTCCTCAGTTTGCTCTTGCGGGTTTAACC 1380
||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1327 TTCGTGTCGCCGGTTTCTATTGTAATGCTCCTTCCTCAGTTCGCTCTTGCCGGTTTAACC 1386
Query 1381 GAAGCGTTTTCCGCGGTGGCTCTTATGGAGTTTCTGACGGTTAGGATGCCTGAGCATATG 1440
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1387 GAAGCGTTTTCCGCGGTGGCTCTGATGGAGTTTCTGACGGTTAGGATGCCTGAGCATATG 1446
Query 1441 AGAGCAGTTGCTGGAGCAATCTTCTTCTTGAGCTCGTCGATTGCGAGTTACATATGCACG 1500
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 AGAGCGGTTGCTGGAGCGATCTTCTTCTTGAGCTCGTCGATTGCGAGTTACATATGCACA 1506
Query 1501 CTTCTAATAAATGTGATAGATGCCGTGACACGCAAGGAAGGGAAATCGTGGTTAGGAGAC 1560
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1507 CTTCTTATAAATGTGATTGATGCCGTGACGCGCAAGGAAGGGAAATCTTGGTTAGGAGAC 1566
Query 1561 AAAGATTTGAACAAGAACAGGCTTGAGAACTACTTTTTCATAATAGCCGGCATTCAAGTC 1620
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1567 AAAGACTTGAACAAGAACAGGCTTGAGAATTACTTTTTCATAATAGCCGGCATTCAAGTC 1626
Query 1621 GCGAATCTGCTCTATTTTAAGTTCTATGCTTCAAGGTTTGCCACTGATAACAAAAAAGGA 1680
|||||||| |||||||||| ||| | ||||||||||| ||||||||| ||||||||||||
Sbjct 1627 GCGAATCTTCTCTATTTTAGGTTATTTGCTTCAAGGTATGCCACTGAAAACAAAAAAGGA 1686
Query 1681 CACTA 1685
|||||
Sbjct 1687 CACTA 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5