BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894781

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26240.1 | Symbols: CLC-D, ATCLC-D | chloride channel D | ch...   134    5e-31


> AT5G26240.1 | Symbols: CLC-D, ATCLC-D | chloride channel D | 
chr5:9189524-9194731 FORWARD LENGTH=2861
Length=2861

 Score =  134 bits (72),  Expect = 5e-31
 Identities = 82/87 (94%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  74   GATGGCAGCAATTTTTTAAGAGTGATAGAGATCGTCGTGATCTTGTCACTTGTGGATGTG  133
            |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  754  GATGGCCGCAACTTTTTAAGAGTGATAGAGATCGGCGTGATCTTGTCACTTGTGGATGTG  813

Query  134  CAGCTGGAGTTGCTGCCGCTTTTAGAG  160
            |||||||||||||||| || |||||||
Sbjct  814  CAGCTGGAGTTGCTGCTGCCTTTAGAG  840



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5