BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894792
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28646.1 | Symbols: WVD2 | TPX2 (targeting protein for Xklp2... 874 0.0
> AT5G28646.1 | Symbols: WVD2 | TPX2 (targeting protein for Xklp2)
protein family | chr5:10674814-10677234 FORWARD LENGTH=1293
Length=1293
Score = 874 bits (473), Expect = 0.0
Identities = 575/622 (92%), Gaps = 15/622 (2%)
Strand=Plus/Plus
Query 1 ATGAGAAGAGAAGTTGTTGAGTCGGTGAGCACCAATGCTTCTAATGAAAGGGTTCACGTG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ATGAGAAGAGAAGTTTTTGAGTCGGTGAGCACCAATGCTTCTAATGAAAGGGTTCACGTG 137
Query 61 GCTCCCAAGATAGCTGCAGAGGAAGAAGATTATGAGGTGAAAGAATGCACTGAGGAGAAT 120
|||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 138 GCTCCCAAAATAGCGGCAGAGGAACAAGATTATGAGGAGAAAGAATGCACTGAGGAGAAT 197
Query 121 TCTCTCTCTCTGAATCATAAATCTTCTAATGTAATCAGAGAGAATGATTTGAAGAAGAAG 180
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 198 TCTCTCTCTCAGAATCATAAATCTTCTAATGTAATCACAGAGAATGATTCGAAGAAGAAG 257
Query 181 CATTTGGATGAAGAAGATGATTGTTCTGTCGCTTCTTCGGTGAAGAATGCTAAGTCTAAA 240
||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 258 AATTTGGATGAAGAGGATGATTGTTCTGTTGCTTCTTCGATGAAGAATGCTAAGTCTAAA 317
Query 241 GTAACTCATGGAACCGCTCCCCGATTTAGGAGTGCTCAGCGAGCTGAGAAACGCAAAGAG 300
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 318 GTAACTCATGGAACCGCTCCACGATTTAGGAGTGCTCAGCGCGCTGAGAAACGAAAAGAG 377
Query 301 TATTATCAAAAGCTTGAAGAGAAACACCAAGCACTTGAAGCCGAAAGGATCGAGCTTGAA 360
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 378 TATTACCAAAAGCTTGAAGAGAAACACCAAGCACTTGAAGCTGAAAGGATCGAGCTCGAA 437
Query 361 CAAAGGCAAAAGGCAAGAATCTTTTTAGAAGAACAAGAAGCAGCCATTAAACAGCTTCGG 420
||||| ||||||| ||||| | | | ||| | |||| |||||||||||||||
Sbjct 438 CAAAGACAAAAGG-AAGAA-C-----A-A-GAA---G---CAGCTATTAAACAGCTTCGG 482
Query 421 AAAAACCTTAAGTTTAAGGCTAATCCCGTTCCCGACTTCTATTACCAAGGACCTCCCGTG 480
|||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 483 AAAAACCTTAAGTTTAAGGCTAATCCTGTTCCTGACTTCTATTACCAACGACCTCCCGTG 542
Query 481 AAACCAGAGCTTAAGAAGTTTCCTTTGACGCGTCCAAAGTCGCCGAAACTCAATCTGTCC 540
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 543 AAACCAGAGCTTAAGAAGTTTCCTCTGACGCGTCCTAAGTCGCCGAAACTCAATCTGTCC 602
Query 541 CGGAGAAAGAGCTGTAGCGATGCGATTACCTCGTCTGGTGAAGAGAATTCGAAGTCACAG 600
|||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 603 AGGAGAAAGAGTTGCAGCGATGCGATTACCTCGTCTGGTGAAGAGAATTCGAACTCACAG 662
Query 601 AACCGCCACAGCGTGGTAGAAT 622
|| ||||| || ||||||||||
Sbjct 663 AATCGCCAGAGTGTGGTAGAAT 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5