BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894800

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltr...   228    5e-59
  AT1G10290.1 | Symbols: ADL6, DRP2A | dynamin-like protein 6 | c...   171    9e-42


> AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltransferase 
ATXR2 | chr3:7688434-7691504 REVERSE LENGTH=1677
Length=1677

 Score =  228 bits (123),  Expect = 5e-59
 Identities = 145/156 (93%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  174   GGAAGAAGCCGAGGAAATCACGAGACTGTTTCTAGATGCTCTTGGTGATGAGTATTCGGT  233
             ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||| 
Sbjct  1161  GGAAGAAACCGAGGAAATCACAAGACCGTTTCTAGATGCTCTTGGTGATGAGTACTCGGA  1220

Query  234   CTATTGCCAAGGAACGGCTTTCTTCCCTCTACAGAGCTGTATGAACCATTCTTGTCGCCC  293
             || ||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||
Sbjct  1221  CTGTTGCCAAGGAACGGCCTTCTTCCCTCTGCAAAGCTGTATGAACCATTCTTGTTGCCC  1280

Query  294   TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAAAGA  329
             |||||||||||||||||||||||||||||||| |||
Sbjct  1281  TAATGCAAAAGCCTTCAAAAGAGAAGAGGACAGAGA  1316


 Score =  187 bits (101),  Expect = 9e-47
 Identities = 133/149 (89%), Gaps = 0/149 (0%)
 Strand=Plus/Plus

Query  26   AGCCAAAGAAGTCGCTACTCTTGGAGGCATGGAAACCAGTATCGATTGGATACAAAAGAA  85
            |||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  839  AGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACCAGTATCGATTGGATACAAAAGAA  898

Query  86   GGTGGTGGGACTACATCGCATTGCCAGATGATGTTCATCCTTTTGATGAAGGAGCGTTGA  145
            |||||||||||| ||| |||||||||||||||||| |||||  |||||||||||| || |
Sbjct  899  GGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGATCCTACTGATGAAGGAGCCTTCA  958

Query  146  GGATGGAGATTAAGAATTTTGCATGTACG  174
            ||||| | || |||||  |||| ||||||
Sbjct  959  GGATGCAAATAAAGAACCTTGCGTGTACG  987


> AT1G10290.1 | Symbols: ADL6, DRP2A | dynamin-like protein 6 | 
chr1:3370558-3377463 FORWARD LENGTH=3304
Length=3304

 Score =  171 bits (92),  Expect = 9e-42
 Identities = 114/125 (91%), Gaps = 0/125 (0%)
 Strand=Plus/Plus

Query  377   TGAACAGTGTTAGAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTA  436
             |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1373  TGAACAATGTTAAAAGGGTTGTTTTGGAGGCAGATGGTTATCAACCTTATCTTATATCTC  1432

Query  437   CAAAGAAAGGGTTCAGAACGTTGATAAAGTTTGTCATTGAGTTGGCTAAAGACCCTCCAC  496
             || |||||||||| ||| ||||||||||| ||||| |||||||||||||||||||  |||
Sbjct  1433  CAGAGAAAGGGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCAC  1492

Query  497   GTCTT  501
             | |||
Sbjct  1493  GCCTT  1497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5