BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894823

Length=777
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-...   335    4e-91


> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 
REVERSE LENGTH=3479
Length=3479

 Score =  335 bits (181),  Expect = 4e-91
 Identities = 290/337 (86%), Gaps = 30/337 (9%)
 Strand=Plus/Plus

Query  349   AGGTTGAAGAGATTCACAAC-TT--T-----TGACCTCTTGACGGAAGAAATGCA--T--  396
             |||||||||||||||||||| ||  |     ||||||||||||||| ||||||||  |  
Sbjct  2101  AGGTTGAAGAGATTCACAACTTTGATCAAGATGACCTCTTGACGGAGGAAATGCATTTAC  2160

Query  397   T---TACTCATGCTGAA--ATTTATCGGGGTTGGTCAATGTGTGGACCCAAAGGAAAAAC  451
             |   |||||||||||||   ||| || |||||||||||||||||||||| ||||||||||
Sbjct  2161  TAGATACTCATGCTGAAGTTTTTGTCTGGGTTGGTCAATGTGTGGACCCTAAGGAAAAAC  2220

Query  452   AAACTGCCTTTGAGATTAGCCAATTTTGTGCAGGATACATATTTCTGGCTGGTTCCCT-G  510
             ||||||||||||||||| |||||        | ||||||||  |||||||||||| || |
Sbjct  2221  AAACTGCCTTTGAGATTGGCCAA--------A-GATACATAAATCTGGCTGGTTCGCTGG  2271

Query  511   AACGGCTTGTCCCCAAAAGTTCCATTATACGAAATCACAGAGGGAAATGAGCCATGCTTT  570
             || |||||||| |||||||||||||||||| ||||||| ||||||||||| || ||| ||
Sbjct  2272  AA-GGCTTGTCTCCAAAAGTTCCATTATACAAAATCACTGAGGGAAATGAACCGTGC-TT  2329

Query  571   C-TCACCACTTATTTTTCATGGTATTCTACTAAAGCTACTGTGCAAGGGAATTCCTTCCA  629
             | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct  2330  CTTCACCACTTATTTTTCATGGGATTCTACTAAAGCTACTGTGCAAGGGAATTCCTACCA  2389

Query  630   GAAGAAGGCAGCATTATTACTTGGTACACATCACGTT  666
             |||||||||||||||||||||||||||||| ||||||
Sbjct  2390  GAAGAAGGCAGCATTATTACTTGGTACACACCACGTT  2426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37776078544


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5