BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894827
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 265 6e-70
AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transpor... 239 4e-62
> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100
REVERSE LENGTH=3479
Length=3479
Score = 265 bits (143), Expect = 6e-70
Identities = 234/273 (86%), Gaps = 25/273 (9%)
Strand=Plus/Plus
Query 119 GGTTGAAGAGATTCACAAC-TT--T-----TGACCTCTTGACGGAAGAAATGCA-TT--T 167
||||||||||||||||||| || | ||||||||||||||| |||||||| || |
Sbjct 2102 GGTTGAAGAGATTCACAACTTTGATCAAGATGACCTCTTGACGGAGGAAATGCATTTACT 2161
Query 168 --A-A-TCATGCTGAA--ATTTATC-GAGGTTGGTCAATGTGTGGACCCAAAGGAAAAAC 220
| | |||||||||| ||| || | ||||||||||||||||||||| ||||||||||
Sbjct 2162 AGATACTCATGCTGAAGTTTTTGTCTG-GGTTGGTCAATGTGTGGACCCTAAGGAAAAAC 2220
Query 221 AAACTGCCTTTGAGATTAGCCAAAGATACATAGATCT--CATGGTTTC-CTTGAATGCCT 277
||||||||||||||||| |||||||||||||| |||| | ||| ||| || ||| | ||
Sbjct 2221 AAACTGCCTTTGAGATTGGCCAAAGATACATAAATCTGGC-TGG-TTCGCTGGAA-GGCT 2277
Query 278 TGTCCCCAAAAGTTCCATTATACGAAATCACAGAGGGAAATGAGCCATGCTTCTTCTCCA 337
|||| |||||||||||||||||| ||||||| ||||||||||| || ||||||||| |||
Sbjct 2278 TGTCTCCAAAAGTTCCATTATACAAAATCACTGAGGGAAATGAACCGTGCTTCTTCACCA 2337
Query 338 CTTATTTTTCATGGGATTCTACTAAAGCTACTG 370
|||||||||||||||||||||||||||||||||
Sbjct 2338 CTTATTTTTCATGGGATTCTACTAAAGCTACTG 2370
Score = 159 bits (86), Expect = 3e-38
Identities = 99/105 (94%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 471 GGATCAGTCTAGCAGTGGTAACCAAGGACCAAGGCAAAGGGCTGCTGCTTTTGCTGCCTT 530
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2432 GGATCAGTCTAGCAGTGGGAACCAAGGACCAAGGCAAAGGGCTGCTGCTTTAGCTGCCTT 2491
Query 531 GACTTCT-CCATTTAATTTTTCTTCTGGGAAAACAAGCTCTCCGA 574
||||||| || ||||||| ||||||||||| ||||||||||||||
Sbjct 2492 GACTTCTGCC-TTTAATTCTTCTTCTGGGAGAACAAGCTCTCCGA 2535
Score = 145 bits (78), Expect = 8e-34
Identities = 94/102 (92%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 370 GATCAGGCTAGCAGTGGGAACCAAGGACCAAGGCAAAGAGCTGCTGCGTTAGCTGCCTTG 429
|||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2433 GATCAGTCTAGCAGTGGGAACCAAGGACCAAGGCAAAGGGCTGCTGCTTTAGCTGCCTTG 2492
Query 430 ACTTCTGGATTAAATACTTCTTCCGGGAGAACAAGCTCTCCG 471
||||||| || ||| ||||||| ||||||||||||||||||
Sbjct 2493 ACTTCTGCCTTTAATTCTTCTTCTGGGAGAACAAGCTCTCCG 2534
> AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport
v-SNARE family protein | chr1:9215901-9218010 FORWARD LENGTH=1088
Length=1088
Score = 239 bits (129), Expect = 4e-62
Identities = 157/171 (92%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 670 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAAA 729
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 548 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT 607
Query 730 GACAGAGTCAGGGAGATTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAGTT 789
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 608 GACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAATT 667
Query 790 TTCCAAGATCTGAATCAGCAATGCCAAACCCTTCTTCATGTGCACACCAAG 840
|||||||| ||| ||||||| |||||||||| ||||||| ||||| ||||
Sbjct 668 GTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5