BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894828 Length=408 Score E Sequences producing significant alignments: (Bits) Value AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transpor... 239 2e-62 AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-... 111 4e-24 > AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport v-SNARE family protein | chr1:9215901-9218010 FORWARD LENGTH=1088 Length=1088 Score = 239 bits (129), Expect = 2e-62 Identities = 157/171 (92%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 142 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAAA 201 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 548 GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT 607 Query 202 GACAGAGTCAGGGAGATTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAGTT 261 |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 608 GACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAATT 667 Query 262 TTCCAAGATCTGAATCAGCAATGCCAAACCCTTCTTCATGTGCACACCAAG 312 |||||||| ||| ||||||| |||||||||| ||||||| ||||| |||| Sbjct 668 GTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG 718 > AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 REVERSE LENGTH=3479 Length=3479 Score = 111 bits (60), Expect = 4e-24 Identities = 66/69 (96%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GAGGATCAAGAAACAGCAGTTCGTCTAGCGAACACAATGAAAAATTCGTTGAAGGAAAGA 60 ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 1539 GAGGATCAAGAAACAGCAGTTCGTCTAGCGAGCACAATGACAAATTCGTTGAAGGGAAGA 1598 Query 61 CCAGTGCAG 69 ||||||||| Sbjct 1599 CCAGTGCAG 1607 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19302815616 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5