BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894828

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transpor...   239    2e-62
  AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-...   111    4e-24


> AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport 
v-SNARE family protein | chr1:9215901-9218010 FORWARD LENGTH=1088
Length=1088

 Score =  239 bits (129),  Expect = 2e-62
 Identities = 157/171 (92%), Gaps = 0/171 (0%)
 Strand=Plus/Plus

Query  142  GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCAGTGAAGAGGCTTGACCAATCAAAA  201
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  
Sbjct  548  GTATCTGCTGATCAAAGAGGAAGATTGGCAATGTCCGTGGAGAGGCTTGACCAATCAAGT  607

Query  202  GACAGAGTCAGGGAGATTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAGTT  261
            |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct  608  GACAGAATCAGGGAGAGTAGAAGACTAATGCTGGAGACAGAAGAGGTTGGCATCTCAATT  667

Query  262  TTCCAAGATCTGAATCAGCAATGCCAAACCCTTCTTCATGTGCACACCAAG  312
             |||||||| ||| ||||||| |||||||||| ||||||| ||||| ||||
Sbjct  668  GTCCAAGATTTGAGTCAGCAACGCCAAACCCTCCTTCATGCGCACAACAAG  718


> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 
REVERSE LENGTH=3479
Length=3479

 Score =  111 bits (60),  Expect = 4e-24
 Identities = 66/69 (96%), Gaps = 0/69 (0%)
 Strand=Plus/Plus

Query  1     GAGGATCAAGAAACAGCAGTTCGTCTAGCGAACACAATGAAAAATTCGTTGAAGGAAAGA  60
             ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct  1539  GAGGATCAAGAAACAGCAGTTCGTCTAGCGAGCACAATGACAAATTCGTTGAAGGGAAGA  1598

Query  61    CCAGTGCAG  69
             |||||||||
Sbjct  1599  CCAGTGCAG  1607



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5