BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894836
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT5G29560.1 | Symbols: | caleosin-related family protein | chr... 787 0.0
> AT5G29560.1 | Symbols: | caleosin-related family protein | chr5:11190543-11191963
REVERSE LENGTH=663
Length=663
Score = 787 bits (426), Expect = 0.0
Identities = 483/510 (95%), Gaps = 5/510 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACAGAT---GCAGGAGCAGATTCGATTGCTACGGTGGCTGAGAAAGCCCCCGTC 57
||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTCGACAGATCACGCAAGAGCAGATTCGATTGCTACGGTGGCTGAGAAAGCCCCTGTC 60
Query 58 ACGGCGGAGAGGAGAGTCCGTACTGATCTTGACGATCGCCTCCCTAAGCCATATGTGCCT 117
|| |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 61 ACAGCGGAGAGGAGAGTCCGTACTGATCTCGATGATCGTCTCCCTAAACCATATGTGCCT 120
Query 118 CGAGCAATGGTTGCACCTGACATGGAAAACGTTAACGGGACAAGAGGACACAAGCACCAG 177
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 CGAGCAATGGTTGCACCAGACATGGAAAACGTTAACGGGACAAGAGGACACAAGCACCGG 180
Query 178 GACATGTCGGTTCTTCAGCAGCACGTTGCTTTCTTTGACCAGGATGGTGATGGTATCATC 237
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GACATGTCGGTTCTTCAGCAACACATTGCTTTCTTTGACCAGGATGGTGATGGTATCATC 240
Query 238 TACCCATCAGAGACATTTAGAGGATTTAGAGCACTTGGTTTCAA-TGTGATCTCTAGTTT 296
|||||||||||||||||||||||||||||||||||||||||||| | || | |||||| |
Sbjct 241 TACCCATCAGAGACATTTAGAGGATTTAGAGCACTTGGTTTCAACT-TGGTTTCTAGTAT 299
Query 297 CTTTCTAACAATCATTGTGCATCTTACAATGAGTTATGCTACATTGCCTACTTGGATGCC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTTCTAACAATCATTGTGCATCTTACAATGAGTTATGCTACATTGCCTACTTGGATGCC 359
Query 357 TTCTCCTACCTTCCCAATCTACATCAAGAACATCCATAGAGCCAAACATGGAAGCGATAC 416
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TTCTCCTACCTTCCCGATTTACATCAAGAACATCCATAGAGCCAAACATGGAAGCGACAC 419
Query 417 CTCAACTTACGACACCGAAGGAAGGTACATTCCTGCAAATCTTGAGAACATGTTCAGTAA 476
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 TTCAACTTACGACACAGAAGGAAGGTACATTCCTGCAAATCTTGAGAACATGTTTAGTAA 479
Query 477 GTATGCACGTACAGTGCCTGACAAGCTAAC 506
|||||| |||||||||||||||||||||||
Sbjct 480 GTATGCCCGTACAGTGCCTGACAAGCTAAC 509
Score = 230 bits (124), Expect = 2e-59
Identities = 143/152 (94%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 567 GGCAGCGAGTAAAATGGAGTGGGGAGTACTCTACTTACTGGCCAAAGACGAGAATGGTCA 626
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 513 GGCAGCGAGTAAAATGGAGTGGGGAGTACTCTACTTCCTTGCCAAAGACGAGAATGGTCA 572
Query 627 CTTATCGAAAGAAGCTGTTC-GGAGATGCTTCGACGGGAGCTTATTCGACTACTGCGCCA 685
||||||||||||||| || | |||||||||| ||||||||||| ||||||||||||||||
Sbjct 573 CTTATCGAAAGAAGCGGT-CAGGAGATGCTTTGACGGGAGCTTGTTCGACTACTGCGCCA 631
Query 686 AGGCGAGAGCTTCTACTAAGAAGACTGAATGA 717
||||||||||||| ||||| ||||||||||||
Sbjct 632 AGGCGAGAGCTTCGACTAAAAAGACTGAATGA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5