BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894848

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25920.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   147    1e-34
  AT3G30320.1 | Symbols:  | unknown protein; Has 15 Blast hits to...   122    2e-27


> AT5G25920.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Eukaryotic aspartyl protease family protein (TAIR:AT3G29750.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: 
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; 
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI 
BLink). | chr5:9044206-9046528 REVERSE LENGTH=1793
Length=1793

 Score =  147 bits (79),  Expect = 1e-34
 Identities = 135/162 (83%), Gaps = 4/162 (2%)
 Strand=Plus/Plus

Query  85   TGGGATCCTGGAGAAATCTTATGTGAACTAGTTCAATTGGGGTGGTTAGATCATTACTTT  144
            |||||||||||||||||||||||||||| | ||||| | || ||| ||||||||||||||
Sbjct  549  TGGGATCCTGGAGAAATCTTATGTGAACAACTTCAACTAGGCTGGATAGATCATTACTTT  608

Query  145  GGTGAGAATAAGAAACAGAAGCTGTTGCCAAGGAAT-TATG-AAATAGTAATTTTGGAGA  202
            |||||||||||| ||| ||| ||  ||||||| ||| | || |||| | || | |||| |
Sbjct  609  GGTGAGAATAAGGAACCGAAACTACTGCCAAG-AATGT-TGGAAATCGAAACTCTGGAAA  666

Query  203  TCACTATCATAGCTAAGGTAATTGGAGTTTTATCCCTGGAGC  244
            ||||||||| || ||||||| |||| ||| | || |||||||
Sbjct  667  TCACTATCAAAGGTAAGGTAGTTGGGGTTATCTCTCTGGAGC  708


> AT3G30320.1 | Symbols:  | unknown protein; Has 15 Blast hits 
to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:11931287-11934694 FORWARD 
LENGTH=2088
Length=2088

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 81/88 (92%), Gaps = 1/88 (1%)
 Strand=Plus/Plus

Query  237   CCTGGAGCGTCTGTCTCATGGTGAAAAAGTTCAGGCTCTAGCAATCCAAGATGGAACTCT  296
             ||| |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  1120  CCT-GAGCGTCTATGTCATGGTGAAAAAGTTCAGGCTCTAGCATTCCAAGATGGAACTCT  1178

Query  297   GCACTTCAGCTCTGGACTTGATAATCAC  324
              |||||||||| |||||||| |||||||
Sbjct  1179  ACACTTCAGCTTTGGACTTGTTAATCAC  1206



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5