BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894861

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G06536.1 | Symbols:  | SPla/RYanodine receptor (SPRY) domain...   802    0.0  


> AT4G06536.1 | Symbols:  | SPla/RYanodine receptor (SPRY) domain-containing 
protein | chr4:3360746-3361255 FORWARD LENGTH=510
Length=510

 Score =  802 bits (434),  Expect = 0.0
 Identities = 478/500 (96%), Gaps = 0/500 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGCTGGTTTGTGAATCGGAGAAACATGAGTGGGCGAAGGAAAACAAAGTGGTTGGT  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  10   ATGAAGCTGGTTTGTGAATCGGAGAAACATGAGTGGGCAAAGGAAAACAAAGTGGTTGGT  69

Query  61   TGTGGTTACGATCCCAGGAAGAAGAAGGTTTACTTCACAGTCAACTCACACTTGGTTCAC  120
            |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| 
Sbjct  70   TGTGGTTACGATCCGAGGAAGAAGAAGGTTTACTTCACAGTTAACTCACACCTGGTTCAT  129

Query  121  GTCATTAACTGTAAAGCAGACGAGTTTGGGACACCTCTCTACCCCACCCTTGCTTCCAAC  180
            || ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct  130  GTTATTAACTGTAAAGCAGACGAGTTCGGGACACCTCTATATCCCACTCTTGCTTCCAAC  189

Query  181  ACAGAGGCCACAGTTCTTGTCAACTTGGGGCAATCTCCATTTTATTACGGCCCGGCAAAC  240
            |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  190  ACAGAGGCCAGAGTTCTTGTCAACTTGGGGCAATCTCCATTTTATTACAGCCCGGCAAAC  249

Query  241  GGGCAGCGCACATCCAACCCATGTGCTGGTGCTGTAGCCGGGCTCGAGGACAGCAAAGAA  300
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  250  GGGCAGCGGACATCAAACCCATGTGCTGGTGCTGTAGCCGGGCTCGAGGACAGCAAAGAG  309

Query  301  CTCTTCTCCATTGGAAGAATAGATTCTCACTATTTGAGCAATTTTTTCATTAACAGAGGA  360
            ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct  310  CTCTTCTCCATTGGAAGAATAGATTCTCACTATTTAAGTAATTTTTTCATTAACCGAGGA  369

Query  361  AATAGTGACGAGATTGCAAGCGGGAGGACCACCGTGGGAAATAGTCATAGACGTAAGCTT  420
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  370  AATAGTGACGAGATTGCAAGCGGGAGGGCCACCGTGGGAAATAGTCATAGACGTAAGCTT  429

Query  421  GACTATGACGAAGAATCAGATGCTGATCTTTTCGAGATTGCGCTTGAACGGTCTGGAAAA  480
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  430  GACTATGACGAAGAATCCGATGCTGATCTTTTTGAGATTGCGCTTGAACGGTCTGGAAAA  489

Query  481  CTAAATCCATCCAAGTTATA  500
            |||||||| |||||||||||
Sbjct  490  CTAAATCCGTCCAAGTTATA  509



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5