BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894865

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11964.1 | Symbols:  | RNA binding;RNA binding | chr3:379395...   209    9e-54


> AT3G11964.1 | Symbols:  | RNA binding;RNA binding | chr3:3793957-3806626 
REVERSE LENGTH=5691
Length=5691

 Score =  209 bits (113),  Expect = 9e-54
 Identities = 130/138 (94%), Gaps = 2/138 (1%)
 Strand=Plus/Plus

Query  1     ACAGTAAATGCTGGTGGGCAGCCAAAATCTGAATCATATGACTTGAAGAAATTCCATGTT  60
             ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct  4243  ACAGTAAATGCTGGTGGGCGGCCAAAATCTGAATCTTATGACTTGAAGAAACTCCATGTT  4302

Query  61    GGAGATATGATTAT-TGGAAGAATCAAACGTGTGGAGCCCTATGGCTTATTCATTGACAT  119
             |||||||||||| | ||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct  4303  GGAGATATGATT-TCTGGGAGAATCAGACGTGTGGAGCCCTTTGGCTTATTCATTGACAT  4361

Query  120   TGATCAAACTGGCATGGT  137
             ||||||||||||||||||
Sbjct  4362  TGATCAAACTGGCATGGT  4379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5