BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894873
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07400.1 | Symbols: VFB3 | VIER F-box proteine 3 | chr4:4197... 2071 0.0
> AT4G07400.1 | Symbols: VFB3 | VIER F-box proteine 3 | chr4:4197847-4199511
REVERSE LENGTH=1665
Length=1665
Score = 2071 bits (1121), Expect = 0.0
Identities = 1475/1643 (90%), Gaps = 35/1643 (2%)
Strand=Plus/Plus
Query 14 GTTGTTGGCAACAA-TTATCCAAAACCGGAGGGAGTAGGCGGGAACACTGTGAACCGCAT 72
|||||| || |||| |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 43 GTTGTTTGCGACAATTTATCCAAAACCAGAGGGAGTAGGCGGGAACATTGTGAACCGCAT 102
Query 73 CGCCGTCGAATGGGCCAATCCACTTCCACATTCCGGCGATCTAAAGCTAGCTTCACTTCT 132
|||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 103 CGCCGTCGAATGGGCCAATCCACTTCCAAATTCCGGCGATCTAAAACTACCTTCACTTCT 162
Query 133 CCGGTACTACCTAA-TGAAGGCGAACATAACTCCGGTGGCGATGAGCCGTACGATTGTAC 191
|||||||||||||| | | || ||||| ||||| |||| ||||||||||||||||| |
Sbjct 163 CCGGTACTACCTAATTTACGG-GAACAAAACTCTGGTGCCGATGAGCCGTACGATTACAT 221
Query 192 TTCTAACTTACCAGACGAATGTTTATCGTTGATTTTCCAATCGCTAACTTGCGCCGACCG 251
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 222 TTCTAACTTACCAGACGAATGCTTATCTTTAATTTTCCAATCGCTAACTTGCGCCGACCT 281
Query 252 GAAACGTTGCTCACTTGTATGTCGTCGCTGGTTAACGATTGAAGGACAGTGTCGTCATCG 311
|||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||
Sbjct 282 AAAACGTTGCTCACTGGTGTGTCGTCGGTGGTTAACAATTGAAGGACAGTGTCGTCATCG 341
Query 312 TCTTTCTCTCAAAGCTCAGTCAGATCTTATCTCAGTCATACCTTCTCTCTTTTCTCGGTT 371
||| ||||||||||| || ||||||||||| ||||| ||||| ||||| ||| |||||||
Sbjct 342 TCTCTCTCTCAAAGCACAATCAGATCTTATTTCAGTGATACCATCTCTATTTACTCGGTT 401
Query 372 TGATTCTGTTACTAAGCTTGTTCTTAGAAGTGACCGTAGATCTCTTGGTATTTGTGATAA 431
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 402 TGATTCTGTTACTAAACTTGTTCTTAGAAGTGACCGTAGATCACTTGGTATATGTGACAA 461
Query 432 CGCATTCGTTATGATTTCGGCTAGATGTCGGAATCTGACGCGGTTGAAGCTGCGCGGTTG 491
|||||||||||||||||| | ||||||||||||| | |||||||||||| | ||||||||
Sbjct 462 CGCATTCGTTATGATTTCTGTTAGATGTCGGAATTTAACGCGGTTGAAGTTACGCGGTTG 521
Query 492 -CCGCGAGATCTCAGATAAAGGGATGGTTGCTTTCTCTGGGAATTGTAGGAGTTTGAAGA 550
||| ||||| || ||| |||||| | | |||| ||| ||||||||||||||||||||
Sbjct 522 TCCG-GAGATTTCGGATTTAGGGATTATAGGTTTCACTGAGAATTGTAGGAGTTTGAAGA 580
Query 551 AAGTATCATTTGGATCTTGTGGGTTTGGGGTTAAAGGAGTGAATGCTTTGTTGAATAATT 610
| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 581 AGGTTTCATTTGGATCTTGTGGGTTTGGTGTTAAAGGAATGAATGCTTTGTTGAATACTT 640
Query 611 GTTTAGGTCTAGAGGAATTGTCGGTGAAACGGTTACGCGGAATTAATAATGTAGCTGGTG 670
||||||||||||||||||||||||| |||||||||||||| || | | ||||
Sbjct 641 GTTTAGGTCTAGAGGAATTGTCGGTTAAACGGTTACGCGG-------AA--T--C-GGTG 688
Query 671 CTGGTGTTGAGCTTATAGG-CCCGGGAGCAGCTGCGGGTTCGTTGAAGATGATTTGCTTA 729
|||||| |||||||||||| || ||| | ||||||||||||||||||| | |||||||||
Sbjct 689 CTGGTGCTGAGCTTATAGGACCTGGG-GGAGCTGCGGGTTCGTTGAAGGTTATTTGCTTA 747
Query 730 AAGGAGCTGCATAATGGTCAGTGTTTTGCTCCGTTGTTAAGCGGAGCTAAAGGTCTTAGG 789
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 748 AAGGAGCTGCATAATGGTCAGTGTTTTGCTCCATTGTTAAGTGGAGCTAAAGGACTTAGG 807
Query 790 ACTTTGAAGATTTTCAGATGTTCAGGGGATTGGGATCGGGTTTTTCAGGAGGTAGGTAAT 849
| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||| || ||
Sbjct 808 ATTTTGAAGATTTTCAGGTGTTCAGGGGATTGGGATCGGGTTTTTGAGGCGGTTCGTGAT 867
Query 850 CAGGTTAATGCTATTGTTGAGATACATTTAGAGAGGATTCAGATGAGTGATTTGGGTCTA 909
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 868 AAGGTTAACGCTATTGTTGAGATACATTTAGAGAGGATTCAGATGAGTGATTTGGGTTTA 927
Query 910 ACTGCGTTATCGAAATGTTCGGGTGTTGAGGTTCTGCACCTTGTGAAAACTCCTGACTGC 969
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 928 ACCGCGTTATCGAAATGTTCGGGTGTTGAGGTTCTGCATCTTGTGAAAACTCCTGATTGT 987
Query 970 ACGAATGTTGGTCTGGCTTTGGTGGCTGAACGTTGTAAACTT-CTAAGAAAGCTTCACAT 1028
|||||||||||| | |||||||||||||| ||||||||| || ||||| |||||||| ||
Sbjct 988 ACGAATGTTGGTTTAGCTTTGGTGGCTGAGCGTTGTAAA-TTGCTAAGGAAGCTTCATAT 1046
Query 1029 TGATGGATGGAAGACAAATCGAATTGGCGATGAAGGGCTTATAGTAGTTGCTAAGTCCTG 1088
||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||| |||
Sbjct 1047 TGATGGATGGAAGACGAATCGAATAGGCGATGAGGGGCTTATAGTTGTTGCTAAGTACTG 1106
Query 1089 TTGGAATTTGCAGGAGTTGGTTTTGATTGGTGTGAACCCTACAAAGTTAAGTTTGGAAGC 1148
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1107 TTGGAATTTGCAGGAGTTGGTTTTGATTGGTGTGAATCCTACTAAGTTAAGTTTGGAAGC 1166
Query 1149 AATTGTCTCAAATTGTCTTAACTTGGAGCGATTGGCATTGTGTGGAAGTGATACTGTAGG 1208
||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1167 GATTGTTTCGAATTGTCTTAACTTGGAGAGATTGGCATTGTGTGGAAGTGATACGGTAGG 1226
Query 1209 TGACACCGAGCTATGTTGTATTGCTGAAAAATGTTTGGCATTGAGGAAGCTTTGCATCAA 1268
|||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct 1227 TGACACTGAGTTATGTTGTATTGCTGAGAAATGTTTGGCGTTGAGGAAGCTTTGTATTAA 1286
Query 1269 GAACTGCCCCATTACTGATGATGGAATCAAAGCTCTTGGGACCGGATGCCCGAATCTGCT 1328
|||||| || |||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1287 GAACTGTCCTATTACTGATGATGGCATCAAAGCTCTTGGGAACGGATGTCCGAATCTGCT 1346
Query 1329 AAAAGTGAAGGTTAAGAAGTGTAGAGGAGTAACCAC-CGAAGGAGCTGATCTGTTAAGGA 1387
|||||||||||||||||||||||||||||| || || | ||||||||||| |||||||||
Sbjct 1347 AAAAGTGAAGGTTAAGAAGTGTAGAGGAGTGACTACTC-AAGGAGCTGATTTGTTAAGGA 1405
Query 1388 CAAGAAGGGCGTTGCTTGTTGTCAATTTAGATACTCCCGAGACACCAATTGCCGAGG-T- 1445
||||||||||||||||||||||||||||||| | |||||||||||||||| |||| |
Sbjct 1406 AAAGAAGGGCGTTGCTTGTTGTCAATTTAGATGCGCCCGAGACACCAATTGTTGAGGGTA 1465
Query 1446 ----CAATGAAGGTGGAGCACAGGCGGATGCAGTTGAGTTCCCTCCATCCAGACTCCAAA 1501
| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 1466 GTGTCGGTGAAGGTGGAGCACAGGAGAATGCAGTTGAGTTCCCTCCTTCCAGACTCCAAA 1525
Query 1502 TACCAACCCTAGGCATTGCATCTGGTAGCACCAGCCGGTCAACCTCGTTTAAGTCACGAT 1561
| |||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1526 TTCCAACCATAGGCCTTGCATCTGGTAGCACCAGCCGGTCATCCTCGTTTAAGTTACGAT 1585
Query 1562 TAGG-TTTTACGAGTCGG-GGAAACTTAGTTGT-TTGTGCACTGAGAAGGTTGGGAAGTC 1618
| || |||| ||| | | |||| ||| ||| | ||||||||||||||||||||||||||
Sbjct 1586 TGGGGTTTTT-GAGCCAGAGGAA-CTTTGTT-TCTTGTGCACTGAGAAGGTTGGGAAGTC 1642
Query 1619 GTAGCAGGTCCCGGAATGATTAG 1641
| ||||||||||||||||| |||
Sbjct 1643 GAAGCAGGTCCCGGAATGAATAG 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5