BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894887
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08028.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family... 322 9e-88
> AT4G08028.1 | Symbols: | Molecular chaperone Hsp40/DnaJ family
protein | chr4:4851544-4851878 FORWARD LENGTH=246
Length=246
Score = 322 bits (174), Expect = 9e-88
Identities = 223/246 (91%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 1 ATGACTACTACTATGAAAACTTTTGTCGCATTTGTTTTCACTGTCTTTTTCATTATATCT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1 ATGACTACTACTATGAAAACTTTTGTCGCATTTGTTTTGACTGTCTTTTTTATTATGTCT 60
Query 61 TCTGCTCATTGTCG---T---ACTGGTGGTAGTCCAGGTTATGGTATAGGGGGGCGTACG 114
|||||||||||||| | |||||||||||||| || ||||| ||||||||||||||
Sbjct 61 TCTGCTCATTGTCGTACTACAACTGGTGGTAGTCCGGGGTATGGAATAGGGGGGCGTACA 120
Query 115 AAGACATGTTTTACACCAACTTGGTGTCTTTACCGTGGAGTCCATGGGTGCGATAGTTAT 174
|| ||||| ||||||||| ||| ||| |||| |||||||||||||||||||||||||||
Sbjct 121 AAAACATGCTTTACACCAGCTTTATGTATTTATCGTGGAGTCCATGGGTGCGATAGTTAT 180
Query 175 TGTAGAACTAAAAATTTTGATTACGGCTATTGTAGTCCAGAACATTGTTGTTGTGTTAAT 234
|||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 181 TGTAAAACTAAAAATTTTGATTACGGCTATTGTAGACAAGAACATTGTTGTTGTGTTAAT 240
Query 235 TACTAA 240
||||||
Sbjct 241 TACTAA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5