BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894891
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09070.1 | Symbols: | TATA-binding related factor (TRF) of ... 388 1e-107
AT2G28230.1 | Symbols: | TATA-binding related factor (TRF) of ... 252 2e-66
AT2G28020.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 71.3 5e-12
> AT4G09070.1 | Symbols: | TATA-binding related factor (TRF) of
subunit 20 of Mediator complex | chr4:5802308-5803392 FORWARD
LENGTH=660
Length=660
Score = 388 bits (210), Expect = 1e-107
Identities = 285/322 (89%), Gaps = 2/322 (1%)
Strand=Plus/Plus
Query 1 ATGTTGCGAGACCAGGCAAATCAAGCGGAGTTCCCGCGTGAATTTCTAGGGGTTTCGCTT 60
||||||| ||| ||||| |||||||| |||||||||||||||||| |||| ||||||||
Sbjct 148 ATGTTGCAAGATCAGGCGAATCAAGCTGAGTTCCCGCGTGAATTTGTAGGAATTTCGCTT 207
Query 61 CCAAAGGAGTCAAG-TAAGTACTACTTCGTCGTCAGATCGCAGAGGATCGTCGTAGATGC 119
|| ||||| | || ||||||||| |||||| |||| ||||| ||||||||||| || ||
Sbjct 208 CCGGAGGAG-CCAGATAAGTACTATTTCGTCATCAGGTCGCAAAGGATCGTCGTGGAAGC 266
Query 120 AGATTCGTCGATTCAAATGATCATGGAGAACCTTGAGTCTTACAAATGCAAGCTCTCGTT 179
|||||| || ||||||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 267 AGATTCTTCAATTCAAATGATCATGGAGAGCCTTCAGTCTTACAAATGCAAACTCTCGTT 326
Query 180 TTACTTTGAAGGGTTTCAGTATCAACTTGGTGATTTTCAAGTGAGAGTTGGTAAAGTTGT 239
||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||
Sbjct 327 TTACTTTGAAGGGCTTGAGTATCAACTTGGGGATTTTCGTTTGAGAGTTGGTAAAGTTGT 386
Query 240 TCCTGCTCATGCCGAGACCGTCAGAGGCATAGTCATGGAGGTGGAGTATCTTCCTATATC 299
|||| ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 387 TCCTACTCATGCTGAGACCATTAGAGGCGTAGTCATGGAGGTGGAGTATCTTCCTATATC 446
Query 300 ATCAATAGAAATGGCAAGAAAA 321
|||||| | |||||||| ||||
Sbjct 447 ATCAATGGGAATGGCAAAAAAA 468
> AT2G28230.1 | Symbols: | TATA-binding related factor (TRF) of
subunit 20 of Mediator complex | chr2:12037677-12039046 REVERSE
LENGTH=875
Length=875
Score = 252 bits (136), Expect = 2e-66
Identities = 257/314 (82%), Gaps = 14/314 (4%)
Strand=Plus/Plus
Query 9 AGACCAGGCAAATCAAGCGGAGTTCCCGCGTGAATTTCTAGGGGTTTCGCTTCCAAAGGA 68
|||||| || |||||| |||||| || ||||| ||||||||| |||| ||| | | |
Sbjct 193 AGACCAAGCGAATCAATTGGAGTTTCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCA 252
Query 69 GTC-AAGTAAGTACTACTTCGTCGTCA-GATCGCAGAGGATCGTCGTAGATGCAGATTCG 126
| | || ||||||||| ||| | ||| || |||||||||| ||| | || || |||||
Sbjct 253 GCCGAA-TAAGTACTATTTCATTATCAGGA-CGCAGAGGATTGTCTTGGAAGCTGATTCT 310
Query 127 TCGATTCAAATGATCATGGAGAACCTTGAGTCTTACAAATGC--AAGCT--CTCGTTTTA 182
|||||||| |||| |||||||| ||| ||||||| |||| | ||| | ||| ||||
Sbjct 311 TCGATTCAGTTGATTATGGAGAAGCTTCAGTCTTATAAAT-CTAAAG-TGGCTC--TTTA 366
Query 183 CTTTGAAGGGTTTCAGTATCAACTTGGTGATTTTCAAG-TGAGAGTTGGTAAAGTTGTTC 241
|||||| |||||||||||||| |||||||||||| | | |||||||||||||||||||||
Sbjct 367 CTTTGATGGGTTTCAGTATCAGCTTGGTGATTTT-AGGTTGAGAGTTGGTAAAGTTGTTC 425
Query 242 CTGCTCATGCCGAGACCGTCAGAGGCATAGTCATGGAGGTGGAGTATCTTCCTATATCAT 301
|| ||||| | |||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 426 CTACTCATTCTGAGAATGTTAGAGGCATTGTCATGGAGGTGGAGTATCTTCCTATATCAT 485
Query 302 CAATAGAAATGGCA 315
|||| |||| ||||
Sbjct 486 CAATGGAAAAGGCA 499
> AT2G28020.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: TATA-binding related factor (TRF) of subunit 20 of
Mediator complex (TAIR:AT2G28230.1); Has 37 Blast hits to 37
proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:11933702-11934060 FORWARD LENGTH=359
Length=359
Score = 71.3 bits (38), Expect = 5e-12
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 278 AGGTGGAGTATCTTCCTATATCATCAATAGAAATGGCAAGAAAA 321
|||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1 AGGTGGAGTATCTTCCTATATCATCAATGGAAATAGCAAGAAAA 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14929521453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5