BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894898
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09012.1 | Symbols: | Mitochondrial ribosomal protein L27 |... 418 1e-116
> AT4G09012.1 | Symbols: | Mitochondrial ribosomal protein L27
| chr4:5780470-5783464 REVERSE LENGTH=527
Length=527
Score = 418 bits (226), Expect = 1e-116
Identities = 265/283 (94%), Gaps = 5/283 (2%)
Strand=Plus/Plus
Query 1 ATGACATTAGGGTTGTTATT-GGGAATTGGAAGAACATTTCGAAGAAAGCGAGCTTCTTC 59
|||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||
Sbjct 249 ATGACATTAGGGTTGTTATTCGGG-ATTGGAAGAACATTCCGAAGAAAGAGAGCTTCTTC 307
Query 60 GCTTGACATTCTCTCTCCCAAACGAGCTCCAAGAGACTTTTACAAGGGGAAAAACTGTAA 119
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 308 GCTTGATATTCTCTCTCCCAAACGAGCTCCCAGAGACTTTTACAAGGGAAAAAACTGTAA 367
Query 120 ACCTCCTGGTTTCCACACTAGAAAAGGAGGATATGTTGTGCAGCCACATAAATTGCCAAA 179
||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||
Sbjct 368 ACCTCCTGGTTTCCACACTCG-TAA--AGGATATGTTGTGCAGCCAGATAAATTGCCAAA 424
Query 180 CTACGTAGTCCCTGATTTGACCGGCTTTAAGCTGAAACCATATGTCTCACAGTGCCCTTT 239
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 425 CTACGTAGTCCCTGATTTGACTGGCTTTAAGCTGAAACCATATGTATCTCAGTGCCCTTT 484
Query 240 AGACGTCAACAAAACAACCGAGTCAACTGAAGCCTCCAAGTGA 282
||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 485 AGACGTCAACAAAACAAACGAGTCAACTGAAGCTTCCAAGTGA 527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12969079242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5