BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894914

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G45063.1 | Symbols:  | copper ion binding;electron carriers ...   510    4e-144


> AT1G45063.1 | Symbols:  | copper ion binding;electron carriers 
| chr1:17033335-17035105 REVERSE LENGTH=1329
Length=1329

 Score =  510 bits (276),  Expect = 4e-144
 Identities = 379/429 (88%), Gaps = 5/429 (1%)
 Strand=Plus/Plus

Query  2     TGGACGTTCTTGTTACCCATGACCCGTCGAGTCCGATTCCTCCA-AAATCACCGAGCAAG  60
             ||| |||| ||||   |||||||||||||||||||| ||||| |  | | ||||||||||
Sbjct  585   TGG-CGTTTTTGTCGTCCATGACCCGTCGAGTCCGAGTCCTCTACCACT-ACCGAGCAAG  642

Query  61    ATTCTTCCGTCTGGAAATATCTACAAGGTAGGCGACTCCAAAAGATGGAGCGTTTACGAC  120
             ||| |||| ||| || || |||||||||| || ||||||||||| ||| |||||||||||
Sbjct  643   ATTATTCCTTCTAGACATGTCTACAAGGTTGGTGACTCCAAAAGTTGGGGCGTTTACGAC  702

Query  121   AGTGAGTTCTATTACCAGTGGAGTAAAGAGAAACAGTTCCATGTTGGAGACAGTCTCCTT  180
             ||||| ||||||||| | ||||||||||||||||||||| |||| |||||| ||||||||
Sbjct  703   AGTGATTTCTATTACAACTGGAGTAAAGAGAAACAGTTCAATGTCGGAGACGGTCTCCTT  762

Query  181   TTCGAATACAACAACAAAGTCAATGATGTCTTCGAGATCAGCGGCGACCTTGAATTCCTA  240
             ||||||||||||||  ||||||| | ||||| |||||||||||| |||||||||||| ||
Sbjct  763   TTCGAATACAACAATGAAGTCAACGGTGTCTACGAGATCAGCGGTGACCTTGAATTCTTA  822

Query  241   TACTGCGACCCGATTTCTCCCGTAGCCGTGCACAAGACAGGCCACGATCTCGTCAAGCTC  300
              |||||||||||| ||||||  |||||||||| ||||||||||||||| || ||||||||
Sbjct  823   AACTGCGACCCGACTTCTCCAATAGCCGTGCATAAGACAGGCCACGATATCATCAAGCTC  882

Query  301   ACCGAACCAGGAATCCATTATTTCATTAGCTCAGAACCAGGTCACTGTGAGGCTGGACTT  360
             ||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct  883   ACCAAACCAGGAATCCATTATTTCATTAGCTCAGAACCGGGTCACTGTGGGGCTGGTCTT  942

Query  361   AAGCTCCAAGTTGTGGTTGGACCAACAGC-CAATGTTCCAAAGTTGTCACCTTTAGAACG  419
             ||||||||||| ||||| ||| ||||| | ||||||||||||||||||||||||||| ||
Sbjct  943   AAGCTCCAAGTCGTGGTCGGAACAACA-CTCAATGTTCCAAAGTTGTCACCTTTAGAGCG  1001

Query  420   TCTCACAAG  428
             |||||||||
Sbjct  1002  TCTCACAAG  1010



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5