BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894922

Length=1002
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G14570.2 | Symbols:  | UBX domain-containing protein | chr1:...   196    3e-49


> AT1G14570.2 | Symbols:  | UBX domain-containing protein | chr1:4983567-4987375 
FORWARD LENGTH=1793
Length=1793

 Score =  196 bits (106),  Expect = 3e-49
 Identities = 127/137 (93%), Gaps = 2/137 (1%)
 Strand=Plus/Plus

Query  366  CAGCTTGGCCTCATTGTACCGTCCTCCTTTTCATCTCATGTTCCATGGCTCTTTTGAACA  425
            |||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct  710  CAGCCTGGCCTCGTTGTACCGTCCTCCTTTTCACCTGATGTTCCAGGGCTCTTTTGAACA  769

Query  426  GGCAAAAGCTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATATACCAG  485
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  770  GGCAAAAACTACTTCGTCTTCCCAGGATAAATGGCTTCTCGTCAACCTCCAATCTACCAC  829

Query  486  GGAATTCA-CTTCTCAT  501
            |||||||| || |||||
Sbjct  830  GGAATTCAGCT-CTCAT  845


 Score =  134 bits (72),  Expect = 2e-30
 Identities = 107/124 (86%), Gaps = 2/124 (2%)
 Strand=Plus/Plus

Query  504   GGTCGATGGTGATTCAACAGAAGGAAGAAAGGTTTGCACATACTACAAGCTTGAATCTAT  563
             |||| ||| |||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct  917   GGTCTATGATGATACCACGGAAGGAAGAAAGGTTTGCACATACTACAAGCTCGAATCTAT  976

Query  564   TCCCTTGGTGCTTGTAATCAATCCAACCACTGGTCAAGCGA-TGAAAAAGTGGTTTGGAA  622
             |||| |||||||||||||  |||||||||||||||||  || ||| || ||||   ||||
Sbjct  977   TCCCGTGGTGCTTGTAATTGATCCAACCACTGGTCAAA-GAATGAGAATGTGGACCGGAA  1035

Query  623   TGGT  626
             ||||
Sbjct  1036  TGGT  1039



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49078761619


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5