BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894928
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08170.2 | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kina... 1424 0.0
> AT4G08170.2 | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase
family protein | chr4:5163399-5167179 REVERSE LENGTH=1549
Length=1549
Score = 1424 bits (771), Expect = 0.0
Identities = 992/1094 (91%), Gaps = 34/1094 (3%)
Strand=Plus/Plus
Query 1 ATGAAGCTAACGGACGATAACGAAGAGGTTACGATGAACGGAACTCGAGAAGTGGAGACG 60
||||||||||||||| ||||||||| | || |||||||||||||||||| ||||||||
Sbjct 180 ATGAAGCTAACGGAC---AACGAAGAGATCACCATGAACGGAACTCGAGAAATGGAGACG 236
Query 61 GCGGAGGAGGAGATTTCGTCGCCGTGTTCGTTAGTGATCGAAGCGTTTCCGGTGAAGAGA 120
| ||| | |||| |||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 237 ACAGAGCAAGAGACATCGTCGCCGTGTTCGTTAGTAATCGAAGCTTTTCCGGTGAAGAAA 296
Query 121 TCGATTATTGTAGGTTATGCTCTTACATCGAAA-AAGATTAAGAGCTTTTTGCAACCAAA 179
|| |||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 297 TCCATTATTGTAGGTTACGCTCTTACATC-AAAGAAGATTAAGAGCTTTTTACAACCAAA 355
Query 180 ACTCGAAGGTTTAGCTAGGAATAAGGGGATATTATTTGTGGCAATAGATCAGAATAGGCC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 356 ACTCGAAGGTTTAGCTAGGAATAAGGGGATATTATTTGTGGCAATAGATCAGAATAAGCC 415
Query 240 ACTTTCAGAGCAGGGTCCGTTTGATATTGTGTTGCATAAGCAAATTGGAAAAGAATGGCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ACTTTCAGAGCAGGGTCCGTTTGATATTGTGTTGCATAAGCAAATTGGAAAAGAATGGCG 475
Query 300 TCGAATTCTTGAGGAATTTAGGCTAGCACATCCAGATGTCACAGTTCTCGATCCTCCAGA 359
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 TCGAATTCTCGAGGAATTTAGGCTAGCACATCCAGATGTCACAGTTCTTGATCCTCCAGA 535
Query 360 TGCAATACTACATCTCCGTAATCGTCAGTCAATGCTTCAGTGTGTTGCGGACATGAATCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGCAATACTACATCTCCGTAATCGTCAGTCAATGCTTCAGTGTGTTGCGGACATGAATCT 595
Query 420 GTCTGATAGTTATGGACGAGTGGGTGTGCCCAAGCAATTGGTAATTAAAAGGGATGCATC 479
|||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 596 GTCTGATAGTAATGGACGCGTTGGTGTGCCCAAGCAATTGGTAATTAAAAAGGATGCATC 655
Query 480 CTCAATCCCGGAAGCTGTCAATAAAGCTGGGCTGAGACTACCTCTTGTTGCAAAGCCATT 539
||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 656 TTCAATTCCGGAGGCTGTCAATAATGCTGGTCTGAGACTACCTCTTGTTGCAAAGCCATT 715
Query 540 GGTCGCTGATGGAAGTGCAAAGTCACATGAACTTTCTCTGGCTTATGACCAGCACGCCCT 599
||| |||||||||||||||||||||||||| ||||| |||||||| || || ||| ||||
Sbjct 716 GGTTGCTGATGGAAGTGCAAAGTCACATGAGCTTTCGCTGGCTTACGATCAACACTCCCT 775
Query 600 TCTGAAGCTCGAGCCTCCTCTTGTTCTTCAGGAGTTTGTTAACCATGGTGGTGTTCTTTT 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 TCTGAAGCTCGAGCCTCCTCTTGTTCTTCAGGAGTTTGTTAACCATGGAGGTGTTCTTTT 835
Query 660 CAAAGTTTATATTGTTGGGGAAGCAATTAGAGTGGTCCGGCGTTTCTCCCTGCCTGATGT 719
||| ||||| ||||||||||| || |||||||| |||||||| |||||||| ||||||||
Sbjct 836 CAAGGTTTACATTGTTGGGGAGGCTATTAGAGTTGTCCGGCGCTTCTCCCTACCTGATGT 895
Query 720 CTCTAGACGAGAACTCTCCGAAGCAGCTGGTGTATTCAGATTCCCCCGGGTCTCTTGTGC 779
|||||||||||||||| || || |||||||||||||| | ||||| |||||||| | ||
Sbjct 896 CTCTAGACGAGAACTCCCCAAATCAGCTGGTGTATTCCGCTTCCCACGGGTCTC-T-TG- 952
Query 780 TGCAGCTTCAGCTGATGAGGCAGATTTGGACCCGAACATTGCTGTAAACAATGTTCTTAT 839
| ||| ||||| | | || || | || | | | | ||| | | | | | |
Sbjct 953 T---GCTGCAGCT--TCA-GCTGA--T-GA--TGCAGA-T-CTGGACCCGA-G--C--A- 993
Query 840 TCTCGTTGCAGAGCTTCCACCGCGTCCTCTGTTGGAGAGACTGGCAAAGGAACTCCGTCG 899
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 994 -----TTGCCGAGCTTCCACCACGTCCTCTGTTGGAGAGACTGGCAAAGGAACTCCGTCG 1048
Query 900 TGGATTGGGTCTACGGCTGTTTAATTTAGACATAATTAGAGAGCACGGGACAAGAGATCG 959
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1049 TGGATTGGGTCTAAGGCTGTTCAATTTAGACATAATTAGAGAGCACGGGACAAGAGATCG 1108
Query 960 GTTTTATGTAATTGACATCAACTATTTCCCAGGGTAC-GGAAAGATGCCAGAGTATGAGC 1018
||||||||| || |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1109 GTTTTATGTGATCGACATCAACTATTTCCCAGGGTACGGGAAA-ATGCCAGAGTATGAGC 1167
Query 1019 ATGTATTCACTGATTTCTTACTGAGTGTGGTACAAAGCCAATGCAAGAAACGAGCCTTGG 1078
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1168 ATGTATTCACTGATTTCTTACTGAGTGTGGTACAAAGCCAATGTAAGAAACGAGCTTTGG 1227
Query 1079 CCGATCAATACTAA 1092
| ||||||||||||
Sbjct 1228 CAGATCAATACTAA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5