BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894982

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08530.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   390    3e-108


> AT4G08530.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr4:5421862-5422356 
FORWARD LENGTH=495
Length=495

 Score =  390 bits (211),  Expect = 3e-108
 Identities = 262/286 (92%), Gaps = 6/286 (2%)
 Strand=Plus/Plus

Query  1    ATGGTGAGTTACCCGAATGGCGATAGACACTGTGTAATGGCGCAAGGCCAAGTGATAAGT  60
            ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  65   ATGGTGACTTACCCGAATGGTGATAGACACTGTGTAATGGCCCAAGGCCAAGTGATAAGT  124

Query  61   GCATGCTTGCAACAAGCCACCGTTAATGGACTACTACATGCAGATTGTTGCTATGCTATA  120
            ||||||||||||||||   ||   || ||||||| |||||| |||||||||||||| |||
Sbjct  125  GCATGCTTGCAACAAG---CC---AACGGACTACCACATGCGGATTGTTGCTATGCCATA  178

Query  121  AACGATGTAAACAGACAAGCAGAGACAACCTACGGTCGTATAGCGCTTTGCAAATGTTTC  180
            ||||||||||||||| | | |||||||| |||||||||| |||| |||||||||||||||
Sbjct  179  AACGATGTAAACAGATATGTAGAGACAATCTACGGTCGTTTAGCTCTTTGCAAATGTTTC  238

Query  181  CAGGAAATTTTAAAAGATTCTCGATTTACAAAACTTATTGGTATGCCGGAAAAATGTGTC  240
            ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  239  CAGGAAATTCTAAAAGATTCTCGATTTACAAAACTTATTGGTATGCCTGAAAAATGTGCC  298

Query  241  ATTCCTAATGCTGTGCCTTTTGACCCCAAAATTGATTGTGACAGGT  286
            |||||||||||||||||||||||||||||||  |||||||||||||
Sbjct  299  ATTCCTAATGCTGTGCCTTTTGACCCCAAAACGGATTGTGACAGGT  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5