BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894992
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08670.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 839 0.0
> AT4G08670.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr4:5536699-5538210
REVERSE LENGTH=693
Length=693
Score = 839 bits (454), Expect = 0.0
Identities = 593/655 (91%), Gaps = 29/655 (4%)
Strand=Plus/Plus
Query 1 ATGAAGCAATCTCTTCTTCTTTCCTTCGTGTTACTATTACTTTCATCATCATCACTCGTT 60
|||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 1 ATGAAGCAATCTCTTCTTCTATCCTTCGTGTTACTACTACTCTCATCATCATCACTCGTG 60
Query 61 ACACCAATCCATGCACGTAACAAATCAAATCCGGCAAAGTCTCCCGTTGGTGCTCCGGCA 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 ACACCAATCCATGCACGTAACAAATCAAATCCGGCAAAGTCTCCTGTTGGTGCTCCAGCA 120
Query 121 CCAGGACCATCAGGTTCTGATTGTTCTTCAGTAATACT-TAGCATGATGGATTGTCTCAC 179
|||||||||||| |||| ||||||||| |||||||| | |||||||||||||||||||
Sbjct 121 CCAGGACCATCAAGTTCCGATTGTTCTACAGTAATA-TATAGCATGATGGATTGTCTCGG 179
Query 180 GTACCTTGGTGTCGGATCAAACGAGACTATGCCAGAGAAATCGTGTTGTGTTGGAATTGA 239
|||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||
Sbjct 180 GTACCTTGGTGTCGGATCAAACGAAACTAAGCCAGAGAAATCGTGTTGTACTGGAATAGA 239
Query 240 AACTGTTTTACAATATAATCCACAATGTATTTGTGCTGGTTTGGTTAGTGCTGGCCAAAT 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AACTGTTTTACAATATAACCCACAATGTATTTGTGCTGGTTTGGTTAGTGCTGGCGAAAT 299
Query 300 GGGAATTGAATTGAATAACACACGAGCCCTTGCAACACCTAAGACTTGCAAACTCTCCAT 359
|||||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 300 GGGAATTGAACTGAATAGCACAAGAGCTCTTGCAACACCTAAGGCTTGCAAACTCTCCAT 359
Query 360 TGCTCCTCCTCATTGTGGTATAATAACTTCAGGTGCTACGACACCAGGTGCATCTCCTGC 419
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 TGCTCCTCCTCATTGTGGTATAATAACTTCAGGCGCTACGACACCAGGTGCATCTCCTG- 418
Query 420 ATCTCCTGTTTCCCCATCAGCCGGAACACCTACGACTTCACCATCCGCAGCCAAGTCACC 479
| | | ||||||| || ||| ||||||||||||||||||| ||||||||||||||
Sbjct 419 -T-T--T----CCCCATCGGCTGGAGCACCTACGACTTCACCATCTGCAGCCAAGTCACC 470
Query 480 AGCAACTTCGGCAACTTCCCCATCTTCGGCAACTTCCCCATCTTCGGATGAGACACCGTC 539
| | || | ||||||||||||| |||||||||||||||||||||||
Sbjct 471 -G-------G--AA-------A-CTTCGGCAACTTCGCCATCTTCGGATGAGACACCGTC 512
Query 540 AATGACTGCACCTTCTCCTACAACCTCTGGCACAAACATCCTCTCAGTTCCTGCACTCAC 599
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 513 AATGACTGCACCTTCTCCTTCATCTTCTGGCACAAACATCCTCTCAGTTCCTGCACTCAC 572
Query 600 CATTGTTTTCGTTATTGTTTCTTCTGTCGCTTACATTTCGGCTTTTTCTAATTAA 654
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 573 CATTGTTTTCGTTATTGTTTCTTCTGTCGCTTACATTTCGGCCTTTTCTAATTAA 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5