BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895001
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38350.1 | Symbols: | Disease resistance protein (NBS-LRR c... 549 3e-155
AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein ... 309 6e-83
AT3G44670.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 82.4 1e-14
> AT5G38350.1 | Symbols: | Disease resistance protein (NBS-LRR
class) family | chr5:15328659-15331528 FORWARD LENGTH=2502
Length=2502
Score = 549 bits (297), Expect = 3e-155
Identities = 610/758 (80%), Gaps = 33/758 (4%)
Strand=Plus/Plus
Query 783 AAGTATGGTGGAGTTGCCATCTTCTATTGGAAACCTTCATCAATTGGTAGA-GTTGAATT 841
|||| |||||||| | || || ||||||||||| |||| | ||||| || | ||||| ||
Sbjct 1536 AAGTTTGGTGGAGCTCCCCTCCTCTATTGGAAAGCTTCGTAAATTGCTA-ATGTTGAGTT 1594
Query 842 TAAAG-GGATGCTCGAAA-CTAGAGGTTCTTCCTACCAAAATCAACTTGGAATCCCTCTA 899
| | | || ||||| ||| ||||||| |||||| ||||| |||||||||||||| ||| |
Sbjct 1595 T-ACGAGGCTGCTC-AAAGCTAGAGGCTCTTCCAACCAATATCAACTTGGAATCTCTCGA 1652
Query 900 TATA-CTTGATCTCACTGATTGCTTAATGTTGAAAAGTTTTCCTGAGATCTCCACAAACA 958
| || ||||||||||||||||||||| || | |||| |||||||||||||| |||||||
Sbjct 1653 T-TACCTTGATCTCACTGATTGCTTATTGATCAAAAAATTTCCTGAGATCTCTACAAACA 1711
Query 959 TTAAAGTTCTCAAGCTCATGGGAACTGCAATTAAAGAAGTGCCTTTGTCGATCAAGTTAT 1018
|||| | ||||||||||| | ||||||||| ||||| || |||| | ||||||||| ||
Sbjct 1712 TTAAGGATCTCAAGCTCACGAAAACTGCAATAAAAGAGGTACCTTCGACGATCAAGTCAT 1771
Query 1019 GGTCTCGTCTTTG-CGACTTGGAAATGTCATACAATGAAAACCTCAAGGAACTCCCGCAT 1077
|||||| |||| | || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1772 GGTCTCATCTTCGTAAAC-TGGAAATGTCATACAGTGAAAACCTCAAGGAACTCCCGCAT 1830
Query 1078 GCTCTTGGTATCATCACAACGTTGTACATCAAAAATACAGAAATGCGAGAGATTCCTCTA 1137
||||||| ||||||||||||| ||||||| || |||||||||||| ||| ||||||| |
Sbjct 1831 GCTCTTGATATCATCACAACGCTGTACATTAACGATACAGAAATGCAAGAAATTCCTC-A 1889
Query 1138 -TGGGTAAAGAAAAGCTCTTGTCTTCGGGA-ACTTAAACTCATCGG-ATGCAAAAAGCTG 1194
||||| ||||||| |||| ||||| | | |||| || | || |||||| | ||||
Sbjct 1890 GTGGGTTAAGAAAATCTCTCATCTTCAG-ACACTTGGGCT-AGAGGGATGCAAGAGGCTG 1947
Query 1195 GTATCACTCCCACAACTTTCAGACTCTTTATTATATCTAGAGGTTGA-AAATTGCGAGTC 1253
||| || |||||||||||||||| || ||| | | |||| ||| | ||| || |||||
Sbjct 1948 GTAACAATCCCACAACTTTCAGATTCCCTATCACAACTAGTGGTA-ACAAACTGTGAGTC 2006
Query 1254 ACTGGAGAGACTCGATTGCTCATTT-AATA--ATCCAAAGATATCTCTCAAGTTTTTTAA 1310
| |||||||||| ||| ||| ||| || | ||||| ||| || |||| |||| | ||
Sbjct 2007 ATTGGAGAGACTTAATTTCTCCTTTCAAAATCATCCAGAGAGATTTCTCTGGTTTCTAAA 2066
Query 1311 TTGCATCAAACTAAATAAAGAAGCGAGGGA-TCTCATTATCAAGACTAGTACTAACTATG 1369
|||| |||| |||||||| |||||||| || | |||| ||| ||||||| || | |||
Sbjct 2067 TTGCTTCAAGCTAAATAATGAAGCGAGAGAAT-TCATC--CAA-ACTAGTAGTACCCATG 2122
Query 1370 C-AGTCTTACCTAGTAGAGAAGTGCCTGCGAACTTCACTTACCGAGCTAATACTAGAAGT 1428
| | ||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 2123 CGA-TCTTACCTAGTAGAGAAGTGCCTGCAAACTTCACTTACCGAGCTAATGG--GA-GT 2178
Query 1429 TTCATGACAATAAGTTTCAATCAAAGGGCTCTTTCTACAACCTCGAGATTCAAGGCTTGC 1488
| ||| | ||| | | ||||| ||| ||||||||||||| | |||||| |||||||||
Sbjct 2179 TCCATAATGGTAAATCTGAATCATAGGCCTCTTTCTACAACTTTGAGATTTAAGGCTTGC 2238
Query 1489 ATCTTCCTAGTTTATAGAGGTGACAAGGA-AGAGGAGG 1525
|||| |||||| | | | |||||| || | ||||||
Sbjct 2239 GTCTTGCTAGTTAAAAAAATTGACAATGATA-AGGAGG 2275
> AT3G44480.1 | Symbols: RPP1, cog1 | Disease resistance protein
(TIR-NBS-LRR class) family | chr3:16090564-16096359 REVERSE
LENGTH=4038
Length=4038
Score = 309 bits (167), Expect = 6e-83
Identities = 655/879 (75%), Gaps = 80/879 (9%)
Strand=Plus/Plus
Query 650 AGCTCCCGTC-CTCGATTGGAAATGCAACAAATCTTCAG-AACTTG--TATT-GTCATAA 704
||||||| || || ||||||| ||| |||||||| || || ||| |||| | | |
Sbjct 2535 AGCTCCC-TCTTTCTATTGGAACTGCCACAAATCTGAAGCAA-TTGAATATTAG-C-GGA 2590
Query 705 TTGTTCAAGTCTGGTGGAGCTGCCC-TTCTCTATTGGA-A-ATGCAACAAATCTCCG--G 759
|| |||||||| ||| | || ||| | ||| |||||| | || | || |||| || |
Sbjct 2591 -TGCTCAAGTCTCGTGAAACT-CCCATCCTCAATTGGAGATAT-C-ACTGATCT-CGAAG 2645
Query 760 TGCTTGTACCT-TGTGAACTGCTCAAGTATGGTGGA-G-TTGCCATCTTCTATTGGAAAC 816
|| ||| | || | | |||||||||||| |||| || | || || || ||||| ||||||
Sbjct 2646 TGTTTG-ATCTATCT-AACTGCTCAAGTCTGGT-GACGCTT-CCTTCCTCTATAGGAAAC 2701
Query 817 CTTCATCAA-TTG-GTAGAGTTGAATTTA-AAG-GGATGCTCGAAA-CTAGAGGTTCTTC 871
||||| || ||| | | |||| || ||| || |||||||| ||| ||||||| |||||
Sbjct 2702 CTTCA-AAACTTGTGCA-AGTT-AA-TTATGAGAGGATGCTC-AAAGCTAGAGGCTCTTC 2756
Query 872 CTACCAAAATCAACTTGGAATCCCTCTATATACTTGATCTCACTGATTGCT-TAATGTTG 930
| | ||| ||||||||| |||| ||| ||| |||| ||||||| ||||||| | | ||||
Sbjct 2757 CAATCAACATCAACTTGAAATCTCTCGATACACTTAATCTCACAGATTGCTCTCA-GTTG 2815
Query 931 AAAAGTTTTCCTGAGATCTCCACAAACATTAAAGTTCTCAAGCTCATGGGAACTGCAATT 990
|||||||||||||||||||||||| ||||| || |||| | | | |||||||||||
Sbjct 2816 AAAAGTTTTCCTGAGATCTCCACACACATTTCAGAGCTCAGGTTAAAAGGAACTGCAATA 2875
Query 991 AAAGAAGTGCCTTTGTCGATCAAGTTATGGTCTCGTCTTTGC-GACTTGGAAATGTCATA 1049
|||||||| || |||||||||| || ||||||| |||| || ||||| | || |||||
Sbjct 2876 AAAGAAGTTCCCTTGTCGATCATGTCGTGGTCTCCTCTT-GCTGACTTTCAGATTTCATA 2934
Query 1050 CAATGAAAACCTCAAGGAACTCCCGCATGCTCTTGGTATCATCAC-AACGTTGTACATCA 1108
| ||||| ||||| |||| ||||||||||| ||| |||||||| || | || | | |
Sbjct 2935 CTTTGAAAGCCTCATGGAATTCCCGCATGCTTTTGACATCATCACGAA-GCTGCATTTGA 2993
Query 1109 AAAATACAGAAATGCGAGA-GATTCCTCTATGGGTAAAGAAAA-GCTCTTGTCTT-CGGG 1165
|| | || || | ||| | |||||| |||||| |||| || | ||| || || || |
Sbjct 2994 GCAA-A--GATATACAAGAAG-TTCCTCCATGGGTCAAGAGAATG-TCTCGT-TTACGTG 3047
Query 1166 AACTTAAACTCATCGGA-TGCAAAAAGCTGGTATCACTCCCACAACTTTCAGACTCT-TT 1223
| |||| |||| | | ||||| || |||||||||||||| ||||||||||| || ||
Sbjct 3048 ATCTTAGTCTCAACA-ACTGCAATAATCTGGTATCACTCCCCCAACTTTCAGATTCCCTT 3106
Query 1224 -ATTATATCTAGAGGTTGAAAATTGCGAGTCACTGGAGAGACTCGATTGCT-CATTTAAT 1281
|||| || || | || ||||| |||| || |||||||| ||||| | | |||||
Sbjct 3107 GATTACATATAT-GCA-GATAATTGTAAGTCCCTCGAGAGACTGGATTGTTGC-TTTAAC 3163
Query 1282 AATCCAAAGATATC-TCTCAAGTTTTTT-AATTGCATCAAACTAAATAAAGAAGCGAGGG 1339
|||||| |||| | |||| | ||| || ||| ||||||| ||| ||||||| || |
Sbjct 3164 AATCCAGAGATC-CGTCTCTA-TTTCCCCAAATGCTTCAAACTGAATCAAGAAGCCAGAG 3221
Query 1340 ATCTCATTAT-CAAGACTAGTACTAACTATGC-A-GTCTTACCTAG-TAGAGAAGTGCCT 1395
||||||| || || ||| ||| || |||| | || || || || || | ||||||||
Sbjct 3222 ATCTCATCATGCAC-ACTTGTA-TAG--ATGCGATGT-TT-CC-AGGTACACAAGTGCCT 3274
Query 1396 GCGAACTTCACTT-ACCGAGCTAATACTAGAAGTTTCAT-GACAAT-AAGTTTCAATCAA 1452
|| ||||| || | ||||||| | || | | ||| | || ||| ||||| || |
Sbjct 3275 GCCTGCTTCA-TTCATCGAGCTACTTCTGGG-GATTCCTTGAAAATCAAGTTG-AAGGAG 3331
Query 1453 AGGGCTCTTTCTACAACCTCGAGATTCAAGGCTTGCATC 1491
| ||||| ||||||||| |||||| |||||||| |||
Sbjct 3332 TCGCCTCTTCCTACAACCTTGAGATTTAAGGCTTGTATC 3370
> AT3G44670.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr3:16216950-16221617 FORWARD LENGTH=3965
Length=3965
Score = 82.4 bits (44), Expect = 1e-14
Identities = 218/299 (73%), Gaps = 24/299 (8%)
Strand=Plus/Plus
Query 670 AATGCAACAAATCTTCAG-AACTTG-TATTGTCATAATTGTTCAAGTCTGGTGGAGCTGC 727
||||| || ||||| ||| |||| | | ||| | ||||| |||||||| | ||||| |
Sbjct 2601 AATGCGACTAATCTCCAGAAACTAGATCTTG-GA-AATTGCTCAAGTCTAATAGAGCT-C 2657
Query 728 CCT-TCTCTATTGGAAATGCAACAAATCT-CCGGTGCTTGTACCTT-GTGAACTGCTCAA 784
||| | |||||||||| ||| |||||||| || ||| | || | | | |||||||
Sbjct 2658 CCTCTTTCTATTGGAACTGCCACAAATCTGAAGG-AATTGAATATTAGCGGA-TGCTCAA 2715
Query 785 GTATGGTGGAGTTGCCATCTTCTATTGGAAACCT-TCATC-AAT-TGGTAGAG-TTGAAT 840
|| | ||| | | ||||| || |||||| | | ||| | ||| | |||| ||| ||
Sbjct 2716 GTCTCGTGAAACTCCCATCCTCAATTGGAGA--TATCA-CTAATCTCAAAGAGTTTG-AT 2771
Query 841 TTAAAGGGA-TGCTCGAAA-CTAGAGGTTCTTCCTACCAAAATCAACTTGGAATCCCTCT 898
| | | ||||| ||| || | || ||||| | ||| ||||||||| ||| |||
Sbjct 2772 CT-ATCTAACTGCTC-AAATCTGGTGGAGCTTCCAATCAACATCAACTTGAAATTTCTCG 2829
Query 899 ATATACTTGATCTCACTGATTGCT-TAATGTTGAAAAGTTTTCCTGAGATCTCCACAAA 956
||| |||| ||||| | | ||||| | ||||||||||||||||||||||||||||||
Sbjct 2830 ATACACTTAATCTCGCAGGTTGCTCGCA-GTTGAAAAGTTTTCCTGAGATCTCCACAAA 2887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86646140670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5