BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895002

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25510.1 | Symbols:  | disease resistance protein (TIR-NBS-L...   283    9e-76


> AT3G25510.1 | Symbols:  | disease resistance protein (TIR-NBS-LRR 
class), putative | chr3:9260838-9268797 REVERSE LENGTH=5946
Length=5946

 Score =  283 bits (153),  Expect = 9e-76
 Identities = 306/378 (81%), Gaps = 18/378 (5%)
 Strand=Plus/Plus

Query  1     ATGGTGGATATTAAAGGATGCTATCCAAGACCTTGCT-TTGATGAGTACAATGCAAAATT  59
             |||||| |||| |||| ||| |||||||| ||||| | ||||||| || | || | | ||
Sbjct  769   ATGGTGAATATCAAAGAATGTTATCCAAGTCCTTG-TCTTGATGAATATAGTGTACAGTT  827

Query  60    GCAACTGCAGAACCGAATGTTATCTCAA-ATGATCGACCATAAAGATATCATGATTTCT-  117
             |||||| || |||  |||||| ||| || |||||| |||| ||||| ||||||||| || 
Sbjct  828   GCAACTTCAAAACAAAATGTTGTCT-AAGATGATCAACCAGAAAGACATCATGATTCCTC  886

Query  118   AGTCTA-GATGTTGCACAAGAAAGGTT-AAGAAATAAGAAAGTACTTCTCA-TTCTTGAC  174
             | | || || || ||||||||| |||| || | | ||||| ||  |||| | | ||||| 
Sbjct  887   A-TTTAGGA-GTAGCACAAGAACGGTTGAA-AGACAAGAAGGTGTTTCT-AGTACTTGAT  942

Query  175   GACGTGGATCGGTTAGCACAGTTAGATGCCTTGGCCAAAGATATTCGATGGTTTGGTCTT  234
             || ||||||| ||||| |||  ||||||| ||||| ||||| | | |||||||||||| |
Sbjct  943   GATGTGGATCAGTTAGGACAACTAGATGCATTGGCGAAAGAAACTAGATGGTTTGGTCCT  1002

Query  235   GGAAGTCGGATTATCATCACAACAGAAGATCGTA-GAATTTTGAAGGCACATGAG-ATCA  292
             ||||||||||||||||||||||||||| ||| || || |||||| ||| ||| || ||||
Sbjct  1003  GGAAGTCGGATTATCATCACAACAGAAAATC-TAAGACTTTTGATGGCTCAT-AGGATCA  1060

Query  293   ACCATATTTACAAAGTGGA-TTACCCATCAACTAATGAAGCTCTTCAAATATTTTGTATG  351
             |||||||||||||||| || ||  | ||||||| |||| ||| ||||||| || ||||||
Sbjct  1061  ACCATATTTACAAAGTAGAATTTTC-ATCAACTGATGAGGCTTTTCAAATCTTCTGTATG  1119

Query  352   AATGCCTTTGGTCAAAAG  369
              |||||||||||||||||
Sbjct  1120  CATGCCTTTGGTCAAAAG  1137



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5