BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895008
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19470.1 | Symbols: ckl5 | casein kinase I-like 5 | chr2:843... 1094 0.0
AT4G08800.1 | Symbols: | Protein kinase superfamily protein | ... 826 0.0
> AT2G19470.1 | Symbols: ckl5 | casein kinase I-like 5 | chr2:8433611-8436553
REVERSE LENGTH=1800
Length=1800
Score = 1094 bits (592), Expect = 0.0
Identities = 819/927 (88%), Gaps = 22/927 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTTCGTATTGGGAATAAGTTCCGGCTTGGTCGGAAAATTGGTAGCGGCTCATTC 60
||||||| |||| ||||||| ||||| || ||||| || |||||||| |||||||| |||
Sbjct 259 ATGGAACCTCGTGTTGGGAACAAGTTTCGCCTTGGCCGCAAAATTGGGAGCGGCTCTTTC 318
Query 61 GGAGAGATTTACCTTGGAAGTGATATTCAGAGTAACGAAGATGTTGCAATTAAGTTTGAA 120
|||||||||||||| |||| |||| |||||| ||||||||| ||||| |||||| |||||
Sbjct 319 GGAGAGATTTACCTCGGAACTGATGTTCAGACTAACGAAGAAGTTGCTATTAAGCTTGAA 378
Query 121 AGTGTGAAGACTGTGCATCCACAATTGTCATATGAGTCAAGGATATATAGAGTTCTTCAG 180
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 379 AGTGTGAAGACTGCGCATCCGCAATTGTCATATGAGTCGAGGATATATAGAGTTCTTCAG 438
Query 181 GGTGGAATTGGAATTCCAAACATGAAATGGTATGGCGTCGATGGGGATTACAATGTCTTA 240
||||||| ||| |||||||| |||||||||||||| || || ||||| ||||||||||||
Sbjct 439 GGTGGAACTGGGATTCCAAATATGAAATGGTATGGTGTTGAGGGGGACTACAATGTCTTA 498
Query 241 GTGATGGATTTGCTTGGTGGAAGCCTTGAAGATCTGTTTTGTTATTGCAACAAGAAGTTT 300
|| ||||||||||||||| ||| ||||||||| ||||| |||||||||| | | |||||
Sbjct 499 GTCATGGATTTGCTTGGTCCAAGTCTTGAAGATTTGTTTAGTTATTGCAAGAGGCAGTTT 558
Query 301 A-CATTGAAGACAGTTCTCATGCTAGCTGATCAAATGATTAATCGGCTCGAGTTCATCCA 359
| | |||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 559 AGC-TTGAAGACTGTTCTTATGCTTGCTGATCAAATGATAAATCGTCTCGAGTTCATTCA 617
Query 360 TTCTAAGTCGTTTCTTCATCGTGATATAAAGCCGGATAATTTCCTTATGGG-TTTGGGAA 418
||||||||||| |||||||||||||||||||||||||||||| || ||||| || ||| |
Sbjct 618 TTCTAAGTCGTATCTTCATCGTGATATAAAGCCGGATAATTTTCTCATGGGCTTAGGG-A 676
Query 419 GGCAGGCAAATCAGGTCTACATCATAGACTTTGGTTTGGCTAGGAAATATAGAGATAGCT 478
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 677 GGCGGGCAAATCAGGTCTACATCATAGACTATGGTTTGGCTAAGAAATATAGAGACAGCT 736
Query 479 CAAGCT-ACCGACATATACCATATAGGGAGAATAAACGTCTAGTTGGGACACCG-GCGTA 536
||| || | ||||||| ||||| |||||||||||| ||||| ||||||| ||| | |||
Sbjct 737 CAA-CTCATAGACATATCCCATACAGGGAGAATAAAAGTCTAATTGGGACTCCGAG-GTA 794
Query 537 TGCCAGCTTGAACACTCACTTAGGGATCGAGCAAAGTCGGAGGGATGATATAGAATCACT 596
||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||
Sbjct 795 TGCCAGCTTGAACACTCACCTAGGGATTGAGCAAAGTCGGAGAGATGATATAGAATCGCT 854
Query 597 TGGTTATATCCTCATGTACTTCCTC-AGAGGAAGTCTTCCATGGAAAGGACTAAAATCTG 655
|||||| ||||||||||| |||||| || |||||||| || ||| |||| || ||| |||
Sbjct 855 TGGTTACATCCTCATGTATTTCCTCAAG-GGAAGTCTCCCTTGGCAAGGGCTGAAAGCTG 913
Query 656 GGAACAAGAAACAGATA-TATGACAAGATTAACGATAAGAAAGTTTCAACTTCCATCGAA 714
| ||||||||||||| | ||||| ||||| | ||| ||||| ||||||||||||||||||
Sbjct 914 GAAACAAGAAACAGA-AGTATGATAAGATCAGCGAAAAGAAGGTTTCAACTTCCATCGAA 972
Query 715 ACGTTATGCGA-AGGTCATCCAATAGAGTTTGCAACCTACCTCCATTACTGCCGCTCCCT 773
||||||||| | ||||||||||| |||||||||| | ||| |||||||||||||||| ||
Sbjct 973 ACGTTATGC-AGAGGTCATCCAACAGAGTTTGCATCTTACTTCCATTACTGCCGCTCACT 1031
Query 774 TAGGTTCGTTGATAAGCCAGACTATGCATATTTGAAGAGACTATTCCGCGACCTTTTTAC 833
|||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1032 TAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATTCCGCAACCTTTTTA- 1090
Query 834 TC-GTGAAGGTTTTCAGTTTGATTTTGTGTTCGACTGGAC-GATATTA-AAGTATCCGCA 890
|| | |||||||||||||||||||||||||| |||||||| | ||| | ||||||| |||
Sbjct 1091 TCCGGGAAGGTTTTCAGTTTGATTTTGTGTTTGACTGGACAG-TAT-ACAAGTATCAGCA 1148
Query 891 ATCACAATGC-GGAAACCCTCCACCTC 916
|||||||| | |||||||||| |||||
Sbjct 1149 ATCACAAT-CTGGAAACCCTCAACCTC 1174
> AT4G08800.1 | Symbols: | Protein kinase superfamily protein
| chr4:5614134-5615919 FORWARD LENGTH=858
Length=858
Score = 826 bits (447), Expect = 0.0
Identities = 575/634 (91%), Gaps = 19/634 (3%)
Strand=Plus/Plus
Query 304 TTGAAGACAGTTCTCATGCTAGCTGATCAAATGATTAATCGGCTCGAGTTCATCCATTCT 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 226 TTGAAGACAGTTCTCATGCTAGCTGATCAAATGATTAATCGGCTCGAGTTTATCCATTCT 285
Query 364 AAGTCGTTTCTTCATCGTGATATAAAGCCGGATAATTTCCTTATGGGTTTGGGAAGGCAG 423
||||||||||||||||| |||||||||||||||||||| |||||||| | | ||
Sbjct 286 AAGTCGTTTCTTCATCGCGATATAAAGCCGGATAATTTTCTTATGGG--T----A---AG 336
Query 424 GCAAATCAGGTCTACATCATAGACTTTGGTTTGGCTAGGAAATATAGAGATAGCTCAAGC 483
|| | || | | ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 337 GC---T--GG-C-AAATC--AGACTTTGGCTTGGCTAGGAAATATAGAGATAGCTCAAGC 387
Query 484 TACCGACATATACCATATAGGGAGAATAAACGTCTAGTTGGGACACCGGCGTATGCCAGC 543
||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 388 TACCGACATATTCCATATAGGGAGAATAAAAGTCTAACTGGGACTCCGGCGTATGCCAGC 447
Query 544 TTGAACACTCACTTAGGGATCGAGCAAAGTCGGAGGGATGATATAGAATCACTTGGTTAT 603
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 448 TTGAACACTCACCTAGGGATCGAGCAAAGTCGGAGGGATGATGTAGAATCACTTGGTTAT 507
Query 604 ATCCTCATGTACTTCCTCAGAGGAAGTCTTCCATGGAAAGGACTAAAATCTGGGAACAAG 663
||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||| |||
Sbjct 508 ATCCTCATGTACTTCCTCAAAGGAAGTCTCCCATGGAAGGGACTAAAAGCTGGGAATAAG 567
Query 664 AAACAGATATATGACAAGATTAACGATAAGAAAGTTTCAACTTCCATCGAAACGTTATGC 723
||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 568 AAACAGAAATATGACAAGATTAGCGAGAAGAAGGTTTCAACTTCCATCGAAACGTTATGT 627
Query 724 GAAGGTCATCCAATAGAGTTTGCAACCTACCTCCATTACTGCCGCTCCCTTAGGTTCGTT 783
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 628 GAAGGTCATCCAATAGAGTTTGCAACCTACATCCATTACTGCCGCTCGCTTAGGTTCGAT 687
Query 784 GATAAGCCAGACTATGCATATTTGAAGAGACTATTCCGCGACCTTTTTACTCGTGAAGGT 843
||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 688 GATAAGCCAGACTATGCCTATTTGAAGAGACTGTTCCGCGACCTTTTTATTCGTGAAGGT 747
Query 844 TTTCAGTTTGATTTTGTGTTCGACTGGACGATATTAAAG-TATCCGCAATCACAATGCGG 902
|||||||||||||||||||| ||||||||| | |||||| | ||||||||||||||| |
Sbjct 748 TTTCAGTTTGATTTTGTGTTTGACTGGACGGTGTTAAAGCTGCCCGCAATCACAATGCCG 807
Query 903 AAACCCTCCACCTCATGCCGATGTACAATCTTGA 936
||||||||||||| ||| ||| ||| ||||||
Sbjct 808 AAACCCTCCACCTTGTGCAAATGCACACTCTTGA 841
Score = 339 bits (183), Expect = 4e-92
Identities = 206/217 (95%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 1 ATGGAACTTCGTATTGGGAATAAGTTCCGGCTTGGTCGGAAAATTGGTAGCGGCTCATTC 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGAACTTCGTATCGGGAATAAGTTCCGGCTTGGTCGGAAAATTGGTAGCGGCGCATTC 60
Query 61 GGAGAGATTTACCTTGGAAGTGATATTCAGAGTAACGAAGATGTTGCAATTAAGTTTGAA 120
||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 61 GGAGAGATTTATCTTGGAACTGATGTTCAAAGTAACGAAGATGTTGCAATTAAGTTTGAA 120
Query 121 AGTGTGAAGACTGTGCATCCACAATT-GTCATATGAGTCAAGGATATATAGAGTTCTTCA 179
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 121 AGTGTGAAGACTGTGCATCCACAATTAG-CATATGAGTCAAGGATATATAGAGTTCTTCA 179
Query 180 GGGTGGAATTGGAATTCCAAACATGAAATGGTATGGC 216
| |||||| ||| ||||||||||||||||||||||||
Sbjct 180 GAGTGGAAATGGTATTCCAAACATGAAATGGTATGGC 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5