BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895014
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08840.1 | Symbols: APUM11, PUM11 | pumilio 11 | chr4:563129... 1892 0.0
> AT4G08840.1 | Symbols: APUM11, PUM11 | pumilio 11 | chr4:5631298-5633779
FORWARD LENGTH=1671
Length=1671
Score = 1892 bits (1024), Expect = 0.0
Identities = 1447/1636 (88%), Gaps = 90/1636 (6%)
Strand=Plus/Plus
Query 1 ATGGATTTTGGGTTTTTTCCTGGTGATTTGAGACAAAGAGGTTCATTTACTGATCTGGGT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGATTTTGGGTTTTTTCCTGGTGATTTGAGACAACGAGGTTCATTTACTGATCTGGGT 60
Query 61 TTTGGTGGGTTTCCTTTAACTTCTTCTTCTTCTGTCTCTAATGGAGGATTTCACTTTTCC 120
||| |||||||||| ||| |||| | |||||||||||| |||||||||||||||
Sbjct 61 TTTAATGGGTTTCCTCTAA---CTTC--C-TCTGTCTCTAAT---GGATTTCACTTTTCC 111
Query 121 GGTGACCGTACAACAAACCCTTTTCTGAACCTTCGAAAGCTTGATACGACGGCGTTAATG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 112 GGTGACCGTACAACAAACCCTTTTCTTAACCTTCGAAAGCTTGATACGACGTCGTTAATG 171
Query 181 GCGGATGGTGGTGATATGGGTTTGTGTCAAAACCTCAGTAAAATGAGTATTTCCGATGAA 240
|||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 172 GCGGATGGTGTTGATATGGGTTTGTGTCAAAACCTCTCTAAAATGAGTATCTCCGATGAA 231
Query 241 AGAAGCAGTTTTTTCAACCACTCTGGTTTTTCCGGCTATGGATGTT--CTAGGT--T-TG 295
||||||| |||||| ||||||||| ||||||||||||||||||||| | |||| | |
Sbjct 232 AGAAGCAATTTTTTTAACCACTCTAGTTTTTCCGGCTATGGATGTTACCAAGGTCGTGAG 291
Query 296 A---CCAAGC-TCGTGAGAGCTT-TAATG-GCGAAGCTTCTGGTTTTGTTGGTTATGGTG 349
| || | | |||| ||||| | | | | | || ||||||||||||||||||||
Sbjct 292 AGCTCCTTTCATGGTGA-AGCTTCT-A-GCTCTATGC--GTGGTTTTGTTGGTTATGGTG 346
Query 350 ATGTTCATAGATTCGAACAGGATCTGAGAGTGAGAGGTCGGCGTGAAGGTTTTGCACAGA 409
||||||||||||||||||| ||||||||||| | | | | | | ||
Sbjct 347 ATGTTCATAGATTCGAACAAGATCTGAGAGT-A-A---------G-A------G--C-GA 385
Query 410 GCTTTCATGGTGGATCTTCTATGAGTGGTTATGTTGGTGAT-G--GTGATTATCATAGAC 466
|||||||||||| |||| |||||||| |||||||||||||| | |||||||||||||||
Sbjct 386 GCTTTCATGGTGAATCTGCTATGAGTAGTTATGTTGGTGATGGTAGTGATTATCATAGAC 445
Query 467 TCAGATTGCTTGCCTTACAAGAAGCTTATAACCCTAACCCTAGCTTTAACCATCACAGAG 526
||||||| ||||||||||||||||||| ||||||||||||||| ||
Sbjct 446 TCAGATTTCTTGCCTTACAAGAAGCTTCTAACCCTAACCCTAG--------AT------- 490
Query 527 GTTTTACAGAGAACAACATGTCTCTTCATAACAGAGATTACATGTTAGAGTTGGAGCATT 586
||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 491 GTTTTACAGAG---AACATGTCTCTTCTTAACAGAGATTACATGTTGGAGTTGGAGCATT 547
Query 587 TCAATCAACAAATCCGACGAGACTTTTCACTACTTCCACAGAAATCTCGATTAGCTTTCC 646
|||||||||||||||| ||||||||||| ||| ||||||||||||||| | ||||||| |
Sbjct 548 TCAATCAACAAATCCGGCGAGACTTTTCTCTAGTTCCACAGAAATCTCCACTAGCTTTTC 607
Query 647 ATGAAGACAGGATCTTTCCACCATTTTCAGCCATGGGAGGTTCTAGAGAGCTTGAGGGTT 706
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 608 ATGAAGAGAGGATCTTGCCACCATTTTCAGCCATGGGAGGTTCTAGAGAGCTTGATGGTT 667
Query 707 CTACTAAGACGTTTTTTAAGGAAGATTCACTGGATTTG-C-CTCTAGATCTTGCTTCTAT 764
|| |||| | | | | ||||| || ||| | | | |||||||||||||| ||
Sbjct 668 CTGCTAA-A-----TGT-ATGAAGA-ACA-AGGA--AGACTCACTAGATCTTGCTTCAAT 716
Query 765 GGTTGATATCTATGGTTCTGTGTGCTTAATGGCAAAAGATCAATTGGGTTGTCGATTCTT 824
|||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 717 GGTTGATAGCTATGGTTCTGTGTACTTAATGGCAAAAGATCAACTGGGTTGTCGATTATT 776
Query 825 ACAGAAGTTTGTGGGA-GAAGGAAGA-TTTGTTGATGTAATGATTGTATTTAAGGAAGTC 882
|||||||||||| || ||||||| | ||||||||||| |||||| |||| ||||||||
Sbjct 777 ACAGAAGTTTGT-AGACGAAGGAA-ATTTTGTTGATGTGATGATTATATTCAAGGAAGTG 834
Query 883 ATTAATCATATCGCTGAGCTTGGAATAGATCCGTTTGGTAACTATTTTATCCAGAAGCTT 942
|||||| || || ||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 835 ATTAATAATGTCATTGAGCTTGGAACGGATCCGTTTGGTAACTATCTTATCCAGAAGCTT 894
Query 943 CTTGAAGTCTGCAATGAAGAACAAAGAACTCAGATTCTCATTAGGTTGACTTCAAAACCT 1002
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ATTGAAGTCTGCAATGAAGAACAAAGAACTCAGATTCTCATTAGGTTGACTTCAAAACCT 954
Query 1003 GGACTTCTTATCAAAATCTCCATCAACAATTATGGGACACGAGTGGTGCAGAAGTTGATT 1062
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGACTTCTTGTCAAAATCTCCATCAACAATTATGGGACACGAGTGGTGCAGAAGTTGATT 1014
Query 1063 GAGACTGTGACTACAAAGGAGCAAATCAGTCTGGTTAAGTCAGCTCTTGTACCGGGATTT 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GAGACTGTGACTACAAAGGAGCAAATCAGTCTGGTTAAGTCAGCTCTTGTACCGGGATTT 1074
Query 1123 CTCTCTCTGGTTAGAGAATTAAATGGAAACCATGTGATACTAAATTGCTTGAAATTCTTT 1182
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCTCTTTGTTTAGAGAATTAAATGGAAACCATGTGATACTAAATTGCTTGAAATTCTTT 1134
Query 1183 GGTCCTAATGATAACAAGTTCATTTTAGAGGCTGCTATTAAGTTCTGCACAGAGATTGCG 1242
||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 1135 AGTCCTAATGATAACAAGTTCATTTTGGAGGCTGCTACTAAGTTCTGCATAGAGATTGCG 1194
Query 1243 ACT-CATCGCCATGGATGTTGTGTGCTTCAACGCTGCGTTTCATACTCGGTTGGGGAGCA 1301
||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1195 ACTAC-TCGCCATGGATGTTGTGTGCTTCAACGCTGCGTTTCGTACTCGGTTGGGGAGCA 1253
Query 1302 ACATGAGAAGCTTGTTGGTGAAATATCCAGAAACTCTCTTCTCCTTGCTCAAGACCCTTA 1361
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ACATGAGAAGCTTGTTGATGAAATATCCAGAAACTCTCTTCTCCTTGCTCAAGACCCTTT 1313
Query 1362 CGGGAACTATGTGGTGCAATACATAATAGAGAAGAAGGTGGGAGGAGTGAATGTGA-TGT 1420
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1314 CGGGAACTATTTGGTGCAATACATAATAGAGAAGAAGGTTGGAGGAGTGAATGT-ACTGT 1372
Query 1421 TTGAGCTACGAGGGAATTACGTGAAATTAGCTACACAGAAGTTTGGTAGCCATGTGGTGG 1480
|||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1373 TTGAGCTAAGAGGGAATTATGTGAAGTTAGCTACACAGAAGTTTGGTAGCCATGTGGTTG 1432
Query 1481 AGAAATG-CATCAGATTTTATCCCGAAAGCAGATCTCAGATTGTGCACGAGCTCGTCTCT 1539
||||||| | |||| | |||||| || |||||||||||||||||| | || |||||||||
Sbjct 1433 AGAAATGTC-TCAGGTATTATCCAGAGAGCAGATCTCAGATTGTGAATGAACTCGTCTCT 1491
Query 1540 GTTCCAAACTTCGAACAGCTTGTTCAAGACCCTTACGCTAACTACGTTATCCAATCTGCT 1599
|||| |||||||| | | ||| ||||||||||||| ||||| ||||| ||||| | ||||
Sbjct 1492 GTTCTAAACTTCGGATATCTTCTTCAAGACCCTTATGCTAATTACGTGATCCAGTGTGCT 1551
Query 1600 CTATCCAAAACCAAGG 1615
||||| ||||||||||
Sbjct 1552 CTATCGAAAACCAAGG 1567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5