BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895033
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09153.1 | Symbols: LCR36 | low-molecular-weight cysteine-ri... 294 2e-79
> AT4G09153.1 | Symbols: LCR36 | low-molecular-weight cysteine-rich
36 | chr4:5835095-5835412 FORWARD LENGTH=231
Length=231
Score = 294 bits (159), Expect = 2e-79
Identities = 211/235 (90%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 1 ATGGCCAAGATATCATGCTCTTATTTTCTCATACTCATGCTTGTTTTGTCAGTTTTTTCA 60
||||| ||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGGCTAAGATATCATGTTCTTATTTACTCATACTTATGCTTGCTTTGTCAGTTTTTTCA 60
Query 61 GTTGTTGAGAAGGCTAAGGGAGATAAACGTTGTACTCTAATCATTGATCTATCTCCATGT 120
|||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||
Sbjct 61 GTTGTTGAGAAGGCTAAGGGAGATAAGCGTTGTAGTATAATCATTGATCTTTCTCCATGT 120
Query 121 TACCCTCAT-GATTGTCGTCTAA-ATTG--TTATCCGGAGCGCAATGGAGTTGGAGAATG 176
|||||| || || ||||||||| || | ||| ||| |||||||||||| |||||||||
Sbjct 121 TACCCT-ATTGAATGTCGTCTATCAT-GCATTA-CCG-AGCGCAATGGAGATGGAGAATG 176
Query 177 TATCGCATCCAAAGTTGGTAGTACTCCTAATTGTGTGTGTACTTATGATTGTTAA 231
| | | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 177 TGTTGTATCCAAAGTTGGTAGTACTCCTAATTGTTTGTGTACTTATGATTGTTAA 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5