BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895038
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09190.1 | Symbols: | F-box and associated interaction doma... 1642 0.0
> AT4G09190.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:5855176-5856327 FORWARD LENGTH=1152
Length=1152
Score = 1642 bits (889), Expect = 0.0
Identities = 1037/1109 (94%), Gaps = 8/1109 (1%)
Strand=Plus/Plus
Query 27 ATCTCAAAGAGAGCATATTCCTCTCGATTTAATCGTGGAGATATTCTCAAGACTGCCATC 86
|||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||||| |
Sbjct 48 ATCTCAAAGAGAGCATATTCCTCTAGATCTAATCGTGGAGATAGTCTCAAGCCTGCCAGC 107
Query 87 AAAATCGATTGTGAGATTTAGGTCCGTTTCTAAGCTCTGGTCTTCAACCACCACCACTCC 146
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 108 AAAATCGATTGTGAGATTTAGGTCCGTTTCTAAGCTCTGGTCTTCAATCATCACCACTCC 167
Query 147 ATATTTCACCAGCTCTGTCGTGACACGGTCCTTGTCATCGCGGCCTTGTGTTCTGCTAAA 206
| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 168 AGATTTCACCAGCTCGGTCGTGACACGGTCCTTGTCATCGCGTCCTTGTGTTCTGCTAAT 227
Query 207 CTT-CAGAAAAGACGACAAGCTGTTCTGTTTTGCGTCTCCAGTACACCAGAAGAAGACTT 265
||| || |||| ||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 228 CTTCCA-AAAACACGACAAGCTGTTTTTTTTTGCTTCTCCAGTACACCAGAAGAAGACTT 286
Query 266 GTCCTAGA-GTGGAGAATTTTCAATTTACAATCCCCAATAATGGTAAACTTCAACGTTAT 324
|||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 287 GTCCTA-ACGTGGAGAATTTTCAATATACAATCCCCAATAATGGTAAGCTTCAACGTTGT 345
Query 325 GAATCCGTCCACGGCTTGATTTACTTGGAAACTTCTACAAATGTCATGTTTATTAGAAAC 384
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 346 GAATCCGTTCACGGCTTGATTTACTTGGAAACTTCTACAAATGTCATGTTTATCAGAAAC 405
Query 385 CCTATCATGAAAACCTTCTACACGTTACCGAAACTTGATAGCAACGAAGGCAGACCCCTA 444
||||||| ||||| ||||| ||||||||| |||||||||||||| ||||||||||| |||
Sbjct 406 CCTATCACGAAAAGCTTCTTCACGTTACCTAAACTTGATAGCAAGGAAGGCAGACCACTA 465
Query 445 ACGGGATTTTTGGGATATGATCCGATCAACGGTAAGTACAAAGTACTATGCATACTTAAA 504
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 466 ACGGGATTTTTGGGATATGATCCAATCAACGGTAAATATAAAGTACTATGCATACTTAAA 525
Query 505 GAGA-GAAACAAGATTGGGATTCTTACATTGGGAGCACAAGAATCATGGAGAATATTAAC 563
|| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 526 GA-ACGAAACAAGATTGGAATTCTTACATTGGGAGCTCAAGAATCATGGAGAATATTATC 584
Query 564 TAAAGGCTTCCTTAGTCATTACAAAGTGACAGGTTGTGCAAAATGCATTGATGGAGTCAT 623
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 585 TAAAGGTTTCCTTAGTCATTACAAAGTGACAGGTTATGCAAAATGCATTGATGGAGTCAT 644
Query 624 CTACTATGAAGGTTCTTTTGGTGATGGTTTAAGACAAGAGCTTGCCATAATGAGTTTTGA 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 CTACTATGAAGGTTCTTTTGGTGATGGTTTAAGACAAGAGCTTGCCATAATGAGTTTTGA 704
Query 684 TCTAAGATCTGAAAAGTTCAGTTTGATTAAACATCCGAAGAAAAATAGCATAGCTACATT 743
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 705 TTTAAGATCTGAAAAGTTCAGTTTGATTAAACATCCGAAGAAAAGTAGCATAGCTACATG 764
Query 744 TTGGTCATGTTATGAGGGGAGATTAGCTTTGGTAAGTTCCATTGCTTCTGGAGTT-GAAT 802
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 765 TTGGTCATCTTATGAGGGAAGATTAGCTTTGGTAAGTTCCATTGCTTCTGGAGTTAGC-T 823
Query 803 TATGGATTTTGGAGGATGCTGAGAATCACAAACAATGGATATCTAAACAATTTCCTTCAC 862
|||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 824 TATGGATTTTGGAGGATGCTGATAATCACAAACAATGGATATATAAACATTTTCCTTCAC 883
Query 863 ATCGTGAATTCATCAAAGGGAGATGGAAGTTGAAGGGTGTTACTCATACTGGTGAATTCA 922
|||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 884 ATCGAGAATTCATCAAAGAGAGATGGAAGTTGAAGGGTGTTACTCGTACTGGTGAATTTA 943
Query 923 TTTACACATCTTATAGATCTTATTTACTTACGGTTTCAGAAAGGATTTTATATCATTGGT 982
||||||||||||| ||| ||||| |||||| ||| || |||| |||||||||| ||||
Sbjct 944 TTTACACATCTTACAGAGCTTATGTACTTAATGTTGAAGGAAGGGTTTTATATCAATGGT 1003
Query 983 TCCGTATTTTGTATGTTGATCCGAAGAGAAACAGTATGAGGGTAGTTATGTATGGAGGAA 1042
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1004 TCCGTATTTTGTATGTTGATCCCAAGAGAAACAGTATGAGGGTAGTTATGCATGGAGGAA 1063
Query 1043 TTGCCGTTGACGATATTAGGCGACTTGATGAAGTTGGATCTGATCTTATGAAAGGCTTGA 1102
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1064 TTGCAGTTGACGATATTAGGCGACTTGATGAAGTTGGATATGATCTTATGAAAGACTTGA 1123
Query 1103 CTGTCATACCAAGTCACATTGAGATTTGA 1131
|||||||||||| ||||||| ||||||||
Sbjct 1124 CTGTCATACCAAATCACATTCAGATTTGA 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5