BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895076
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69660.1 | Symbols: | TRAF-like family protein | chr1:26199... 374 1e-102
> AT1G69660.1 | Symbols: | TRAF-like family protein | chr1:26199623-26200603
REVERSE LENGTH=696
Length=696
Score = 374 bits (202), Expect = 1e-102
Identities = 539/697 (77%), Gaps = 41/697 (6%)
Strand=Plus/Plus
Query 253 TCCACAACTCCAACTGAGGTGTATGC-AAATCTCCAG-ttttttgtttttAACAAAAAAG 310
|||||| | |||||||||| || ||| || |||| | || | ||| | ||||| ||||
Sbjct 7 TCCACACCACCAACTGAGGCGTTTGCGGAA-CTCC-GCTTCTATGTCTACAACAAGAAAG 64
Query 311 AAAACAAGTACTTTACTATTCAAGATGTGGAA-TCGAAGCCGTT-CAATACACTAAGAAC 368
|||||||||||||||||||||||||||||||| | |||| ||| |||| |||| ||||
Sbjct 65 AAAACAAGTACTTTACTATTCAAGATGTGGAAGTA-AAGC-GTTTCAATGCACTTAGAAT 122
Query 369 AATGTGGGGATTGCCGCAAGTGCTTGCACT-TGATACATTCAATGATCGT-AATAATGGA 426
|||||||||||| |||| ||| || | ||||||||| | | ||| | || ||||||
Sbjct 123 GGTGTGGGGATTGCTAAAAGTTCTTTCA-TATGATACATTTACTAATCCTGAA-AATGGA 180
Query 427 TACCTCTTTGATGGAGATCATTGTGAGTTTGGTGTTGATATCATTGTTGTTCCACCTCCA 486
| | ||||||| || | | | |||||||||||||||||| || |||||| |||||| ||
Sbjct 181 TTCATCTTTGAGGGTGGTGAATGTGAGTTTGGTGTTGATGTCCTTGTTGCTCCACC-CCT 239
Query 487 -ACCAAATGGGAAATGT-TATCTTTTG-TGA-AA-CT-TCCTTATCCTAAGTTCTCTTGG 540
|| || |||||||| | | ||||||| ||| || || || | ||| || |||||||||
Sbjct 240 TACTAATTGGGAAAT-TCTCTCTTTTGATGAGAAACTCTC-TCCTCCCAAATTCTCTTGG 297
Query 541 ATTGTTAAAAACTTCTCTGAGATAAAAGATAATCCTTACACATCTGACAGCTTTTCAAAG 600
| | |||| || || |||||| | ||||| || ||||||||| ||| | | | | |
Sbjct 298 AATCTTAAGAATTTTTCTGAGTTGAAAGAGGATGTTTACACATCAAACAAATATCCCATG 357
Query 601 GGAGGAAAGAAATGGGTTCTCAAGGTGTATCCCAAGGGCTACTCTACACCAGATAGTAAA 660
||||||||| |||||||||| ||| ||||||| ||||| |||||| | ||||| | |||
Sbjct 358 GGAGGAAAGGAATGGGTTCTAAAGCTGTATCCAAAGGGAAACTCTAGAGCAGATGGCAAA 417
Query 661 TGGTTATCCATTTATCTGTATTTAGCTGATGGTGAAATTTTAAAGAAC-GATGAAAA-AA 718
| |||||| | ||| || ||||||||||| |||||| |||| | | ||||| || ||
Sbjct 418 TATTTATCCCTATATGTGCATTTAGCTGATAGTGAAACACTAAA-ATCAGATGAGAAGAA 476
Query 719 TTTACGTGCAAGCACATGTGAAAGTTGA-AGACCCACGTGGATCCAATCACTT--AACAT 775
||| | ||||| ||||||| |||| | |||||| |||||| |||||| | || |
Sbjct 477 TTT-CAAGCAAGGACATGTGCGAGTTCTTA-ACCCACTTGGATCTAATCACGTCGAAG-T 533
Query 776 GCAAGCTTAACTGGTGGTTCAATAGAC-CAAGCCAAAG-TTGTGGTTGGGATCACTT-CG 832
||| | | ||| |||| ||| || ||||| | | ||| |||||||||||||| |
Sbjct 534 ACAATCG-AGCTGCTGGTACAAG-GAATCAAGC-AGGGGTTGGGGTTGGGATCACTTTC- 589
Query 833 TGTCTACAGCTGAA-CTTCGAAAGTCTTACTTGGACAA-GAAAGATACTTTGAATGTTGA 890
|||||| |||| || ||||| ||| ||||||||||||| ||| ||| | |||||||||||
Sbjct 590 TGTCTATAGCT-AATCTTCGGAAGACTTACTTGGACAAAGAA-GATGCGTTGAATGTTGA 647
Query 891 GGTCGAATTTAAAGTTGTTTCTGCGACCAACTATTCT 927
||||||| |||||||||||||| ||||| ||||||
Sbjct 648 AATCGAATTCAAAGTTGTTTCTGCAACCAAGTATTCT 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5