BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895088

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64035.1 | Symbols:  | pseudogene, putative serpin, blastp m...   470    7e-132


> AT1G64035.1 | Symbols:  | pseudogene, putative serpin, blastp 
match of 55% identity and 1.1e-82 P-value to GP|26224736|gb|AAN76362.1||AY158152 
serpin-like protein {Citrus x paradisi} 
| chr1:23755496-23757736 REVERSE LENGTH=2241
Length=2241

 Score =  470 bits (254),  Expect = 7e-132
 Identities = 372/428 (87%), Gaps = 11/428 (3%)
 Strand=Plus/Plus

Query  67    ACGAAGAAAAAGCAAAA-GATGGATGTGAAAGGAGCGATGAACAAGCAAAACGACGTTGC  125
             |||| ||| |||||||| | |  ||||  ||| ||||||||| |||||||||||||||||
Sbjct  993   ACGACGAAGAAGCAAAACG-TCCATGT-CAAGAAGCGATGAAGAAGCAAAACGACGTTGC  1050

Query  126   TCTGTTCCTTGCGGGGAAAGTAATCTCTGCCATAGCCAAAAACTCTAACTTCGTCTTCTC  185
             ||| |||||||||||| ||||||||||||||  || ||||||||||||| ||||||||||
Sbjct  1051  TCTTTTCCTTGCGGGGGAAGTAATCTCTGCCGCAGACAAAAACTCTAACGTCGTCTTCTC  1110

Query  186   TCCGGCATCTATCAACTCTGTTCTCACCATGACCGCTGCTACCACCGACA-TCGAAAAAC  244
             ||| |||||||||||||| |||||||||||| ||||||||||| |||||| | |||  ||
Sbjct  1111  TCCTGCATCTATCAACTCCGTTCTCACCATGGCCGCTGCTACCTCCGACAGT-GAAGCAC  1169

Query  245   TAAGATCCTT-CATCCTCTCCTTTCTTAGGTCTTCTTCCACTGGCGAACTCAACG-CAGT  302
             ||| || ||| |||||||||||| ||||||||||||||||| | ||| ||||||| || |
Sbjct  1170  TAAAAT-CTTGCATCCTCTCCTTCCTTAGGTCTTCTTCCACCGACGAGCTCAACGACA-T  1227

Query  303   TTTCAGTGAAATCGCTTCCGTCGTCCTCGTTGACGGAAGCAAAAGAGGTGGGCCAAAAAT  362
              ||| | ||||| ||||||||||||||||| ||||||||||||| |||||| || |||||
Sbjct  1228  CTTCCGCGAAATAGCTTCCGTCGTCCTCGTCGACGGAAGCAAAACAGGTGGCCCCAAAAT  1287

Query  363   CGTGGCGGTTAATGGAGTGTGGATAGAGCAATCACTTTCGTGTAGTCCCGAGTCGAAAGA  422
             |  || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct  1288  CACGGTGGTTAATGGAGTGTGGAGAGAGCAATCACTTCCGTGTAGTCCCGAGTCGAAAGA  1347

Query  423   TCTCTTTGAGAATTTTTTCAAGGCTACTTACGCTCAAGTTGATTTCCTA-CACAAGGTTG  481
             ||||||||||||||| | |||| || ||| ||||||||||||||||| | | ||||||  
Sbjct  1348  TCTCTTTGAGAATTTCTACAAGTCTGCTTTCGCTCAAGTTGATTTCCGATC-CAAGGTCA  1406

Query  482   GTTTCTGA  489
             ||||||||
Sbjct  1407  GTTTCTGA  1414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5