BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895103

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17930.1 | Symbols:  | Phosphatidylinositol 3- and 4-kinase ...   379    8e-105
  AT4G36080.1 | Symbols:  | phosphotransferases, alcohol group as...   331    2e-90 


> AT2G17930.1 | Symbols:  | Phosphatidylinositol 3- and 4-kinase 
family protein with FAT domain | chr2:7784288-7802230 REVERSE 
LENGTH=11744
Length=11744

 Score =  379 bits (205),  Expect = 8e-105
 Identities = 237/253 (94%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  56    ATCCTAAAGTGCTTACATCATTGAACAGACTTCGAACAGCTTGTATTGAGCTTTTGTGCA  115
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  3956  ATCCTAAAGTGCTTACATCATTGAACAGACTTCGAACAGCTTGTATTGAGCTTCTCTGCA  4015

Query  116   CAACTATGGCATGGACTGATTTTCGAACGCAAACTCACAATGAACTAAGAGCCAAGATAA  175
             | |||||||| ||||||||||| |||||||||||||||||||||||| | ||||| ||||
Sbjct  4016  CTACTATGGCGTGGACTGATTTCCGAACGCAAACTCACAATGAACTACGTGCCAAAATAA  4075

Query  176   TTTCAATGTTTTTCAAGTCTCTTACATGTAGAGCACCAGAAATCGTGGCGGTTGCTAAGG  235
             |||| ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct  4076  TTTCCATGTTCTTCAAGTCTCTAACATGTAGAGCACCAGAAATTGTGGCAGTTGCTAAGG  4135

Query  236   AGGGTTTAAGACAGGTTATCAATCAACAACGAATGCCCAAGGAACTTCTTCAGAGCAGCC  295
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  4136  AGGGTTTAAGACAGGTTATCAATCAACAACGCATGCCCAAGGAACTTCTTCAGAGTAGCC  4195

Query  296   TCAGGCCTATACT  308
             ||||||| |||||
Sbjct  4196  TCAGGCCAATACT  4208


> AT4G36080.1 | Symbols:  | phosphotransferases, alcohol group 
as acceptor;binding;inositol or phosphatidylinositol kinases 
| chr4:17059824-17077982 REVERSE LENGTH=12031
Length=12031

 Score =  331 bits (179),  Expect = 2e-90
 Identities = 233/259 (90%), Gaps = 3/259 (1%)
 Strand=Plus/Plus

Query  53    GAGATCCTAAAGTGCTTACATCATTGAACAGACTTCGAACAGCTTGTATTGAGCTTTTGT  112
             ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  4305  GAG-TCCTAAAGTCCTTACATCATTGAACAGACTTCGAACAGCTTGTATTGAGATTCTGT  4363

Query  113   GCACAACTATGGCATGGACTGATTTTCGAACGCAAACTCACAATGAACTAAGAGCCAAGA  172
             ||||||||||||| ||| |||| |||||||| |||| ||||||||||||| | || ||||
Sbjct  4364  GCACAACTATGGCTTGGGCTGACTTTCGAACTCAAAGTCACAATGAACTACGTGCGAAGA  4423

Query  173   TAATTTCAATGTTTTTCAAGTCTCTTA-CATGTAGAGCACCAGAAATCGTGGCGGTTGCT  231
             ||||||| |||||||||||||| |||| | ||| ||||||||||||| ||| | ||||| 
Sbjct  4424  TAATTTCCATGTTTTTCAAGTC-CTTAACGTGTCGAGCACCAGAAATTGTGACCGTTGCC  4482

Query  232   AAGGAGGGTTTAAGACAGGTTATCAATCAACAACGAATGCCCAAGGAACTTCTTCAGAGC  291
             |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| 
Sbjct  4483  AAGGAGGGGTTAAGACAGGTTATCAATCAACAACGGATGCCCAAAGAACTTCTTCAGAGT  4542

Query  292   AGCCTCAGGCCTATACTAG  310
             |||||||| ||||||||||
Sbjct  4543  AGCCTCAGACCTATACTAG  4561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5