BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895109

Length=825
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G43826.1 | Symbols:  | pseudogene, hypothetical protein | ch...   167    2e-40


> AT3G43826.1 | Symbols:  | pseudogene, hypothetical protein | 
chr3:15675393-15676148 REVERSE LENGTH=756
Length=756

 Score =  167 bits (90),  Expect = 2e-40
 Identities = 109/118 (92%), Gaps = 1/118 (1%)
 Strand=Plus/Plus

Query  403  AGTAGAATCGCTAACTATATGATAATTGTCTTCACGGGTGGCGATGAATTGGAAGAGAAC  462
            |||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  277  AGTA-AATCACTAACTATATAATAATTGTCTTTACGGGTGGCGATGAATTGGAAGAGAAC  335

Query  463  GAAGAGACGTTGGAGGATTATTTGACTCAAGAGTGTCCACAATTCCTAAAAGTGAGTG  520
            |||||||||||||||||||||||||||||| | |||| ||||||||| || |||||||
Sbjct  336  GAAGAGACGTTGGAGGATTATTTGACTCAATAATGTCAACAATTCCTTAACGTGAGTG  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40187317600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5