BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895109 Length=825 Score E Sequences producing significant alignments: (Bits) Value AT3G43826.1 | Symbols: | pseudogene, hypothetical protein | ch... 167 2e-40 > AT3G43826.1 | Symbols: | pseudogene, hypothetical protein | chr3:15675393-15676148 REVERSE LENGTH=756 Length=756 Score = 167 bits (90), Expect = 2e-40 Identities = 109/118 (92%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 403 AGTAGAATCGCTAACTATATGATAATTGTCTTCACGGGTGGCGATGAATTGGAAGAGAAC 462 |||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 277 AGTA-AATCACTAACTATATAATAATTGTCTTTACGGGTGGCGATGAATTGGAAGAGAAC 335 Query 463 GAAGAGACGTTGGAGGATTATTTGACTCAAGAGTGTCCACAATTCCTAAAAGTGAGTG 520 |||||||||||||||||||||||||||||| | |||| ||||||||| || ||||||| Sbjct 336 GAAGAGACGTTGGAGGATTATTTGACTCAATAATGTCAACAATTCCTTAACGTGAGTG 393 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40187317600 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5