BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895113
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09950.1 | Symbols: | P-loop containing nucleoside triphosp... 1613 0.0
> AT4G09950.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:6234762-6236312
FORWARD LENGTH=1011
Length=1011
Score = 1613 bits (873), Expect = 0.0
Identities = 966/1012 (95%), Gaps = 2/1012 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTTGGATTCGTCTGCACTTAACGTGGAGAATGATTGGAAACCTGAAAGAACTCTT 60
|||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGTGGTGGATTCGTCTGCACTTAACGTGGAGAATGATTGGAAACCTGAGAGAACTCTA 60
Query 61 GTTCTACTCGGTCGAACAGGG-AATGGTAAAAGCGCAACGGGAAACAGCATCCTAGGTAA 119
||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GTTTTACTCGGTCGAAC-GGGTAATGGTAAAAGTGCAACGGGAAACAGCATCCTAGGTAA 119
Query 120 AACTATGTTTCAGTCAAAAGCAAGAGGAAAATTCATTACCAAAGAGTGTAAGCTACATAA 179
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 AACTATGTTTCAGTCAAAGGCAAGAGGAAAATTCATTACCAAAGAATGTAAGCTACATAA 179
Query 180 ATCCAAGCTACCAAATGGTCTGACCATCAATGTTATCGACACCCCTGGTCTGTTTAGTGC 239
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 180 ATCCAAGCTACCAAATGGTCTAACCATCAATGTTATCGACACTCCTGGTCTGTTTAGTGC 239
Query 240 TTCCTCGACGACAGATTTTACAATCAGAGAAATCATTAGATGCTTGCTTCTAGCTAAAGG 299
|||||| || || ||||| || |||||||||||| |||||||||| ||||||||||||||
Sbjct 240 TTCCTCCACAACGGATTTCACCATCAGAGAAATCGTTAGATGCTTACTTCTAGCTAAAGG 299
Query 300 TGGTATCGATGCAGTGCTTCTTATCTTCTCTGTAAGGAATCGGTTAACAGAAGAAGAACA 359
||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 300 CGGTATCGATGCAGTGCTTCTTGTTTTCTCTTTAAGGAATCGGTTAACAGAAGAAGAACA 359
Query 360 ATCAACGCTTCGCACATTAAAGATCCTTTTCGGAAGTCAAATCGTTGACTATATAATCGT 419
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 ATCAACGCTTCGTACATTAAAGATCCTTTTCGGAAGTCAAATCGTTGACTATATCATCGT 419
Query 420 TGTTTTCACCAATGAGGATGCACTCGAGTATGGAGAAACTTTGGATGATTATTTGGAAGA 479
|||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 420 TGTTTTCACCAATGAGGATGCACTTGAGTGTGGAGAAACTCTGGATGATTATTTGGAAGA 479
Query 480 TTGTCCTGAATTTCAGGAGATTCTCAAAGAATGTGATGATCGTAAAGTGTTGTTTGACAA 539
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTCCTGAGTTTCAGGAGATTCTCGAAGAATGTGATGATCGTAAAGTGTTGTTTGACAA 539
Query 540 TAGTTATAATGCCCCTGTGAGCAAGAAAGACAGACAAGTCCATGATCTTCTCAACCTCGT 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TAGTTATAATGCCCCCGTGAGCAAGAAAGACAGACAAGTCCATGATCTTCTCAACCTCGT 599
Query 600 CGAACAAATCTCAAAGAAGAACAATGGAAAATCTTATATGGCTGACTTATCACATGAGCT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 TGAACAAATCTCAAAGAAGAACAATGGAAAATCTTATATGGCTGACTTATCACATGAACT 659
Query 660 AAGGGAGAATGAGGCCACTATAGAGGAAAAGCAGAAGAAGATTGAAGCAATGAAAGGTTG 719
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 660 AAGGGAGAATGAGGCCACTATAAAGGAAAAGCAGAAGCAGATTGAAGAAATGAAAGGTTG 719
Query 720 GTCTTCAAAACAAGAGATATCTCAAATGAAAAAGGAACTAGAGAAATCGCATAACGAAAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTCTTCAAAACAAGAGATATCTCAAATGAAAAAGGAACTAGAGAAATCGCATAACGAAAT 779
Query 780 GCTCGAGGGGATAAAAGAGAAGATCGCTAATCAGCTGAAGGAATCATTGGAGGATATGAA 839
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 780 GCTTGAGGGGATAAAAGAGAAGATCTCTAATCAGCTGAAGGAATCATTGGAGGATGTGAA 839
Query 840 GGAGCAATTAGCTAAGGCACAAGCCGAGAGAGAAGAAACCGAGAAAAAGATGAATGAAAT 899
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 840 GGAGCAATTAGCTAAAGCACAAGCCGAGAGAGAGGAAACGGAGAAAAAGATGAATGAAAT 899
Query 900 TCAGAAACTATCTTCTGATGAGATCAGGAGGCTAAGAGAACAACTTAACAAAGCTGAGAA 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 TCAGAAACTATCTTCTGATGAGATCAGGAGGCTAAGAGAACAACTCAACAAAGCTGAGAA 959
Query 960 AGAAACTGCTTCGTTACGGACCGAACTCAACAAGAAGTGCACTGTTCTTTGA 1011
|||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 960 AGAAACTGCTTCGTTACGCACCGAACTCAACAAGAAATGTACTGTTCTTTGA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5