BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895135
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10090.1 | Symbols: ELP6 | elongator protein 6 | chr4:630536... 1230 0.0
> AT4G10090.1 | Symbols: ELP6 | elongator protein 6 | chr4:6305368-6307518
FORWARD LENGTH=1108
Length=1108
Score = 1230 bits (666), Expect = 0.0
Identities = 748/789 (95%), Gaps = 0/789 (0%)
Strand=Plus/Plus
Query 1 ATGGATCGATCTTTGAATCTCCTCGATTTAGCCTTAGGGTTCGATGAGCAGCTAGCTAAT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 88 ATGGATCGTTCTTTGAATCTCCTCGATTTAGCCTTAGGGTTCGATGAGCAGCTAGCTATT 147
Query 61 CCATCTCCACTAAATGGGAAAGTAATACTAATCGAAGACTGTGTAGAGACCAGTGGTTCC 120
||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 148 CCATCGCCACTAAATGGAAAAGTAATACTAATAGAAGACTGTGTAGAGACGAGTGGTTCC 207
Query 121 TTTGTTCTTCACCAGCTGATGAAACGTGTTCTCTCCCCTAATTCCTCTGACGCTCTTATC 180
||||| ||||||||||| |||||||||||||||||| |||| ||||| ||||| ||||||
Sbjct 208 TTTGTACTTCACCAGCTAATGAAACGTGTTCTCTCCTCTAACTCCTCCGACGCACTTATC 267
Query 181 TTTCTCGCTTTTGCTCGCCCTTTCTCTCATTATGATCGAATCTTGCGTAAACTGGGATGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TTTCTCGCTTTTGCTCGCCCTTTCTCTCATTATGATCGAATCTTGCGTAAACTGGGATGT 327
Query 241 AATTTAGCGACCCATAAGACAAATAATCGATTGGTGTTCTTTGACATGCTCATGATCAAG 300
|||||||| ||||||||| | ||||||||||||||||||||||||||||||||| | |||
Sbjct 328 AATTTAGCTACCCATAAGTCGAATAATCGATTGGTGTTCTTTGACATGCTCATGGTTAAG 387
Query 301 TGTTCAGATAGTGAAGAAATGGAAGACAATGTGAGTGCAGTTGCGAAACTATTTCGGGAG 360
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TGTTCAGATGGGGATCAAATGGAAGACAATGTGAGTGCAGTTGCGAAACTATTTCGGGAG 447
Query 361 ATACAAGAAACTGTTCGAAAGCTACAGAGTGTAACAAGTGGTAACATAACCGTTATGGTG 420
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 448 ATACAAGAAACCGTTCGAAAGCTACAGAGTGTAACAAGTGGTAACATAACTGTTATGGTG 507
Query 421 GATGACATGTCTCTCCTGGAAATTGCAACTACCGGCAGCAATTCAGATCATGTCTTAGAC 480
|||||||||||||| ||||||||||| |||||||||||||| |||||||| || || |||
Sbjct 508 GATGACATGTCTCTGCTGGAAATTGCTACTACCGGCAGCAACTCAGATCACGTATTGGAC 567
Query 481 TTCCTCCACTATTGCCATACCTTAAGTTCTGAAAGCAATTGTTCATTGGTCATTCTCAAT 540
||| | || |||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 568 TTCTTGCATTATTGCCACACATTAAGTTCTGAAAGCAATTGTTCATTGGTCATCCTCAAT 627
Query 541 CATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTT 687
Query 601 GCAGATGTTGTGATAAAGGCAGAGCCTTTAGCCTCTGGTTTAGCAAATGATGTACATGGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GCAGATGTTGTGATAAAGGCAGAGCCTTTAGCCTCTGGTTTAGCAAATGATGTACATGGC 747
Query 661 CAATTGACTGTTCTGAACAAGGGGATAAGCAACTCAGGTCGAGGAACCTCGAGGAACAAG 720
|||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 748 CAATTGACTGTTCTGAACAAAGGGATAAGCAACTCAGGTAGAGGAAGCTCGAGGAACAAG 807
Query 721 TTGCAGAATTTTCAGTTCAGGATCAAGGACAATGGTATCGACTATTTCTATCCTGGTTGC 780
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 808 TTGCAGAATTTTCAATTCAGGATCAAAGAAAATGGTATCGACTATTTCTATCCTGGTTGC 867
Query 781 AGAAGCTGA 789
|||||||||
Sbjct 868 AGAAGCTGA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5