BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895136
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10710.1 | Symbols: SPT16 | global transcription factor C | ... 1205 0.0
AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6586262 FORWA... 1046 0.0
> AT4G10710.1 | Symbols: SPT16 | global transcription factor C
| chr4:6601989-6606354 REVERSE LENGTH=3639
Length=3639
Score = 1205 bits (652), Expect = 0.0
Identities = 748/796 (94%), Gaps = 0/796 (0%)
Strand=Plus/Plus
Query 753 AAACCGGGTCAACGATATGTGGCAACTACCCCAGTTTGCAAGTCTTAACCTAGAGTTTGA 812
||||||||| || ||||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 2592 AAACCGGGTGAATGATATGTGGCAACTACCACAGTTTGCAAGTCTGGACCTTGAGTTTGA 2651
Query 813 TCAACCTCTGAGAGAGCTTGGCTTCCATGGTGTTCCGTATAAGACATCTGTATTCATTAT 872
||||||||||||||||||||| ||||||||||||||| | |||||||||| |||||| ||
Sbjct 2652 TCAACCTCTGAGAGAGCTTGGTTTCCATGGTGTTCCGCACAAGACATCTGCATTCATAAT 2711
Query 873 ACCAACCTCGAGCTGCTTAGTTGAGCTGATAGAAAACCCGTTCTTAGTGGTAAGTCTGAG 932
||| ||||| |||||||||||||||||||||||| |||||||| | ||||| ||||||||
Sbjct 2712 ACCGACCTCCAGCTGCTTAGTTGAGCTGATAGAATACCCGTTCCTCGTGGTGAGTCTGAG 2771
Query 933 TGAGATTGAGATAGTGAATCTTGAGAGAGTTGGGTTTGGGCAGAAGAACTTTGACATGGC 992
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2772 TGAGATTGAGATTGTGAATCTTGAGAGAGTTGGGTTTGGGCAGAAGAACTTTGACATGGC 2831
Query 993 CATCATCTTCAAGGACTTCAAAAAAGATGTTCTCAGAGTTGACTCAGTTCCCACAAGTTC 1052
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2832 CATCATCTTCAAGGACTTCAAAAAAGATGTTCTCAGGGTTGACTCAGTTCCCACAAGCTC 2891
Query 1053 ACTAGAGGGGATAAAGGAGTGGCTTGACACTATAGATATAAAGTACTACGAGAGCAAACT 1112
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 2892 CCTAGAGGGGATAAAGGAGTGGCTAGACACCACAGATATAAAGTACTACGAGAGCAAACT 2951
Query 1113 GAATCTGAACTGGAGACAGATCCTGAAGACGATCACGGATGATCCGCAGAGCTTTATAGA 1172
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2952 GAATCTGAACTGGAGACAGATCCTAAAGACGATCACAGATGATCCGCAGAGCTTTATAGA 3011
Query 1173 TGATGGAGGATGGGAGTTTTTGAATCTGGACGGAAGCGACTCAGAATCTGGAGGCTCTGA 1232
||||||||||||||||||| |||| |||||||||||||| ||||||||||| || |||||
Sbjct 3012 TGATGGAGGATGGGAGTTTCTGAACCTGGACGGAAGCGATTCAGAATCTGGCGGGTCTGA 3071
Query 1233 GGAGTCAGACAAAGGATATGAACCGTCAGATGTCGAGGTTGAGTCTGAGTCAGAGGATGA 1292
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 3072 GGAGTCAGACAAAGGATATGAACCATCAGATGTAGAGGTTGAGTCTGAGTCAGAGGACGA 3131
Query 1293 GGCTTCAGAGAGTGGGTCAATGGTTgagtcagaggatgaagaagaagaggactcagagaa 1352
|||||||||||||| |||| |||| |||||||| ||||| |||||||||||||||||| |
Sbjct 3132 GGCTTCAGAGAGTGAGTCACTGGTGGAGTCAGACGATGATGAAGAAGAGGACTCAGAGCA 3191
Query 1353 agagtcagaagaagagaaaggtaagacttgggatgagctggagagagaaGCTACTAATGC 1412
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3192 AGAGTCAGAGGAAGAGAAAGGTAAGACTTGGGATGAACTGGAGAGAGAAGCTACTAATGC 3251
Query 1413 AGATAGAGAGCATGGAGTTGAGTTTGATAGTGAGGAAGAGAGGAAGAGAAGGAAGATGAA 1472
||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 3252 AGACAGAGAGCATGGAGTTGAGTCTGATAGCGAGGAAGAGAGGAAGAGAAGAAAGATGAA 3311
Query 1473 AGCGTTTGGGAAATCGCGACCTGGAACTAGCGGTGGAGGCGGTAGTAGTAGCATGAAGAA 1532
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3312 AGCGTTTGGGAAATCGCGACCTGGAACTAGCGGTGGAGGTGGTAGTAGCAGCATGAAGAA 3371
Query 1533 CATGCCACCATCTAAA 1548
||||||||||||||||
Sbjct 3372 CATGCCACCATCTAAA 3387
Score = 791 bits (428), Expect = 0.0
Identities = 663/772 (86%), Gaps = 33/772 (4%)
Strand=Plus/Plus
Query 9 CTACAAGAATATTAACGACATGCCCCAACCTCGGGATTTGATGAT-CACGATTGATCACA 67
|||||||||| ||||||||||||||| | | ||| |||||||| || | ||||| ||
Sbjct 1800 CTACAAGAATGTTAACGACATGCCCC-A--TAAGGAATTGATGATCCA-GGTTGAT-ACG 1854
Query 68 AG-AGCAACGCTGTATTATTACCAATATACGGCAGCATGGTTCCATTCAACGTGACTACA 126
|| | | | |||||||| ||||| || || || ||| ||||||||||| | ||| |||||
Sbjct 1855 AGAAACGAGGCTGTATTGTTACCCATCTATGGGAGCTTGGTTCCATTCCATGTGGCTACA 1914
Query 127 ATAAGAACAGTCTTAGG----C-A-AT--C-A---AAA-TAC--CATCCGTATCATCTTC 171
||||||||||| | ||| | | || | | ||| | | |||||||||||| |||
Sbjct 1915 ATAAGAACAGTGTCAGGCAATCAAGATACCAACCGAAACTGCTACATCCGTATCATTTTC 1974
Query 172 AATGTCCCGGGTACACCCTTAAACCCTAATGACTCAAACTCTTTGAAAAACCAGGATGCT 231
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||
Sbjct 1975 AATGTCCCGGGTACACCCTTCAACCCTCATGACTCAAACTCTTTGAAAAACCAGGGTGCT 2034
Query 232 ATCTACCTCAAGGAGGtttttttCCGGACCAAGGATTCAAGGCATAGCAGCCAAGTAGTT 291
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 2035 ATCTACCTCAAGGAGGTTTCATTCCGGACCAAGGATTCAAGGCATAGCAGCGAAGTAACT 2094
Query 292 CAGTC-GTTTAAGACCCTCAAACGGCAAGTCATGTCCCGGGAGTCAGAGAGAGCGGAAAG 350
|| | | |||||||||| | ||||||||||||| || |||||||||||||||| |||||
Sbjct 2095 CA-ACAGATTAAGACCCTTAGACGGCAAGTCATGGCCAGGGAGTCAGAGAGAGCTGAAAG 2153
Query 351 AACGTCATTGGTGACTCAAGAGAAACTTAAGATTGCAAGTAACAAGGCCAAACCCTTAAG 410
|| |||||||||| |||||||||||| || ||||| | |||||| ||||||| | ||
Sbjct 2154 GGCGACATTGGTGACCCAAGAGAAACTTCAGCTTGCAGGGAACAAGTTCAAACCCCTCAG 2213
Query 411 GTTGTCCAACCTATGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCCTGGGACACT 470
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 GTTGTCCGAGCTGTGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCCTGGGACACT 2273
Query 471 GGAAGCTCATGCCAATGGTTTCAGGTATTCAACGACCA------ACGAGCGCGTAGATGT 524
||||||||||| |||||||||||||||||||| |||| |||||||||| |||||
Sbjct 2274 CGAAGCTCATGCAAATGGTTTCAGGTATTCAACTACCAGGCCTGACGAGCGCGTGGATGT 2333
Query 525 CCTCTTTGCAAACATAAAGCATGCGTTTGTACAACCGGCTGAGAAGGAGATGACCACTCT 584
||| |||||||||||||||||||||||| | || || |||||||||||||||| ||| ||
Sbjct 2334 CCTGTTTGCAAACATAAAGCATGCGTTTTTCCAGCCTGCTGAGAAGGAGATGATCACCCT 2393
Query 585 CCTTCATTTTCATTTGCACAATCACATCATGGTAGGAACCAAGAAAACAAAGGACGTCCA 644
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 2394 CCTTCATTTTCATTTGCACAACCACATCATGGTAGGAACTAAGAAGACAAAGGACGTTCA 2453
Query 645 GTTTTACGTGCAGGTAATGGATGTTGTGCAGTCTTTAGGTGGTGGGAGGAGATGATCATC 704
|| || ||| |||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2454 ATTCTATGTGGAGGTAATGGATGTTGTGCAGTCTTTAGGTGGTGGGAGGAGAT---CAGC 2510
Query 705 CTATGATCCAGATGAGATTGATGAAGAACAGCGAGAGCGCGATAGGAAAAAC 756
||||||||||||||||||||| ||||||||| | |||||||||||||| |||
Sbjct 2511 CTATGATCCAGATGAGATTGACGAAGAACAGAGGGAGCGCGATAGGAAGAAC 2562
> AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6586262 FORWARD
LENGTH=1536
Length=1536
Score = 1046 bits (566), Expect = 0.0
Identities = 719/792 (91%), Gaps = 13/792 (2%)
Strand=Plus/Plus
Query 759 GGTCAACGATATGTGGCAACTACCCCAGTTTGCAAGTCTT-AACCTAGAGTTTGATCAAC 817
||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||
Sbjct 738 GGTCAACGATATGTGGCAACTACCCCAGTTTGCAAGT-TTGAGCTTAGAGTTTGATCAAC 796
Query 818 CTCTGAGAGAGCTTGGCTTCCATGGTGTTCCGTATAAGACATCTGTATTCATTATACCAA 877
||||||||||| |||| ||| ||||||| || | ||||||||| ||||| ||||| |
Sbjct 797 CTCTGAGAGAGTTTGGTTTCAATGGTGTCCCCCACAAGACATCTACCTTCATAATACCGA 856
Query 878 CCTCGAGCTGCTTAGTTGAGCTGATAGAAAACCCGTTCTTAGTGGTAAGTCTGAGTGAGA 937
|||| ||||||||||||||||||| |||| ||||||||| ||||| |||| |||||||
Sbjct 857 CCTCAAGCTGCTTAGTTGAGCTGACAGAATCCCCGTTCTTGGTGGTCTGTCTAAGTGAGA 916
Query 938 TTGAGATAGTGAATCTTGAGAGAGTTGGGTTTGGGCAGAAGAACTTTGACATGGCCATCA 997
||||||| |||||||||||||||||||||||||| || |||| |||||||||||| ||||
Sbjct 917 TTGAGATTGTGAATCTTGAGAGAGTTGGGTTTGGTCAAAAGAGCTTTGACATGGCTATCA 976
Query 998 TCTTCAAGGACTTCAAAAAAGATGTTCTCAGAGTTGACTCAGTTCCCACAAGTTCA-CTA 1056
||||||||||||| || ||||||||||| || |||||||||||||| ||||||| | ||
Sbjct 977 TCTTCAAGGACTTGAAGAAAGATGTTCTTAGGGTTGACTCAGTTCCAACAAGTT-AGTTA 1035
Query 1057 GAGGGGATAAAGGAGTGGCTTGACACTATAGATATAAAGTACTACGAGAGCAAACTGAAT 1116
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1036 GAGGGGATAAAGGAATGGCTTGACACTACAGATATAAAGTACTACGAGAGCAAACTGAAT 1095
Query 1117 CTGAACTGGAGACAGATCCTGAAGACGATCACGGATGATCCGCAGAGCTTTATAGATGAT 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1096 CTGAACTGGAGACAGATCCTGAAGACGATCACGGATGATCCGCAGAGCTTTACAGATGCT 1155
Query 1177 GGAGGATGGGAGTTTTTGAATCTGGACGGAAGCGACTCAGAATCTGGAGGCTCTGAGGAG 1236
|||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||||
Sbjct 1156 GGAGGATGGGAGTTTTTGAATCAGGACGGAAGCGATTCAGAGTCTGGCGGCTCTGAGGAC 1215
Query 1237 TCAGACAAAGGATATGAACCGTCAGATGTCGAGGTTGAGTCTGAGTCAGAGGATGAGGCT 1296
||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| |
Sbjct 1216 TCAGACAAAGGGTATGAACCATCAGATGTGGAGGTTGAGTCTGAGTCAGAGGACGAGACA 1275
Query 1297 TCAGAGAGTGGGTCAATGGTTgagtcagaggatgaagaagaagaggactcagagaaagag 1356
|||||||||| |||| | || | || | ||||||||||||||||||||| |||||
Sbjct 1276 TCAGAGAGTGAGTCA--GAC-GA-T--GA--A-GAAGAAGAAGAGGACTCAGAGCAAGAG 1326
Query 1357 tcagaagaagagaaaggtaagacttgggatgagctggagagagaaGCTACTAATGCAGAT 1416
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1327 TCAGAGGAAGAGAAAGGTAAGACTTGGGCTGAGCTGGAGAGAGAAGCTACTAATGCAGAC 1386
Query 1417 AGAGAGCATGGAGTTGAGTTTGATAGTGAGGAAGAGAGGAAGAGAAGGAAGATGAAAGCG 1476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AGAGAGCATGGAGTTGAGTCTGATAGTGAGGAAGAGAGGAAGAGAAGGAAGATGAAAGCG 1446
Query 1477 TTTGGGAAATCGCGACCTGGAACTAGCGGTGGAGGCGGTAGTAGTAGCATGAAGAACATG 1536
|||||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 1447 TTTGGGAAATCGCGTCCTGGAAGTAGCGGTGCAGGCGGTAGTAGCAGCATGAAGAACATG 1506
Query 1537 CCACCATCTAAA 1548
||||||||||||
Sbjct 1507 CCACCATCTAAA 1518
Score = 880 bits (476), Expect = 0.0
Identities = 634/710 (89%), Gaps = 12/710 (2%)
Strand=Plus/Plus
Query 49 ATGATCACGATTGATCACAAGAGCAACGCTGTATTATTACCAATATACGGCAGCATGGTT 108
||||||||| |||||||||||||| || ||||||| ||||||||||||||||| ||||||
Sbjct 1 ATGATCACGGTTGATCACAAGAGCGACACTGTATTGTTACCAATATACGGCAGGATGGTT 60
Query 109 CCATTCAACGTGACTACAATAAGAACAGTCTTAGGCAATCAAAATACCATCCGTATCATC 168
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 61 CCATTCAACGTGACTACAATAAGAACAGTCTTAGGCAATCAAAACACCATCCGTGTAATA 120
Query 169 TTCAATGTCCCGGGTACACCCTTAAACCCTAATGACTCAAACTCTTTGAAAAACCAGGAT 228
|||||||||||||||||||||||||||||||||||||| | || ||||||| ||||
Sbjct 121 TTCAATGTCCCGGGTACACCCTTAAACCCTAATGACTC----T-TT-GAAAAACAAGGAC 174
Query 229 GCTATCTACCTCAAGGAGGtttttttCCGGACCAAGGATTCAAGGCATAGCAGCCAAGTA 288
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 175 GCTATCTACCTCAAGGAGGTTTCATTCCGGACCAAGGATTCAAGGCATAGCAGCGATGTA 234
Query 289 GTTCAGTC-GTTTAAGACCCTCAAACGGCAAGTCATGTCCCGGGAGTCAGAGAGAGCGGA 347
||||| | | |||||| ||||| |||| |||||||| | ||||||||||||||||| ||
Sbjct 235 GTTCAA-CAGGTTAAGAGCCTCAGACGGAAAGTCATGGCACGGGAGTCAGAGAGAGCTGA 293
Query 348 AAGAACGTCATTGGTGA-CTCAAGAGAAACTTAAGATTGCAAGTAACAAGGCCAAACCCT 406
||||| ||| |||||| | ||||| |||||| |||||| ||| ||||| | |||||||
Sbjct 294 GAGAACTTCACTGGTGAAC-CAAGAAAAACTTCAGATTGTAAGGAACAACTCAAAACCCT 352
Query 407 TAAGGTTGTCCAACCTATGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCCTGGGA 466
|||| |||||||| || ||||||||||||||||||||||| |||||||||| || |||||
Sbjct 353 TAAGTTTGTCCAATCTGTGGATCCGTCCGCCTTTTAGTGGACGCAAGAAGAATCGTGGGA 412
Query 467 CACTGGAAGCTCATGCCAATGGTTTCAGGTATTCAACGACCAACGAGCGCGTAGATGTCC 526
|||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 413 CACTTGAAGCTCATGTCAATGGTTTTAGGTATTCAACGACCAACGAGCGCGTTGATGTCC 472
Query 527 TCTTTGCAAACATAAAGCATGCGTTTGTACAACCGGCTGAGAAGGAGATGACCACTCTCC 586
| |||||||||||||||||||||||| | || ||||| ||||||||||||||||| |||
Sbjct 473 TGTTTGCAAACATAAAGCATGCGTTTTTTCAGCCGGCGGAGAAGGAGATGACCACCCTC- 531
Query 587 TT-CATTTTCATTTGCACAATCACATCATGGTAGGAACCAAGAAAACAAAGGACGTCCAG 645
|| ||||||||| | ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 532 TTACATTTTCATCTCCACAACCACATCATGGTAGGAACCAAGAAAACAAAAGACGTACAG 591
Query 646 TTTTACGTGCAGGTAATGGATGTTGTGCAGTCTTTAGGTGGTGGGAGGAGATGATCATCC 705
||||| ||| |||||||||||||||||||||||||||| ||| ||||||||| |||| |
Sbjct 592 TTTTATGTGGAGGTAATGGATGTTGTGCAGTCTTTAGGAGGTAGGAGGAGATCATCAGCT 651
Query 706 TATGATCCAGATGAGATTGATGAAGAACAGCGAGAGCGCGATAGGAAAAA 755
|||||| |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 652 TATGATGCAGATGAGATTGTTGAAGAACAGAGAGAGCGCGATAGGAAAAA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5