BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895151
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10220.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1515 0.0
AT4G10210.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1166 0.0
AT4G23080.1 | Symbols: | Protein of Unknown Function (DUF239) ... 383 2e-105
> AT4G10220.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:6362189-6365079 FORWARD LENGTH=1203
Length=1203
Score = 1515 bits (820), Expect = 0.0
Identities = 1050/1161 (90%), Gaps = 15/1161 (1%)
Strand=Plus/Plus
Query 37 TGCTATATTATATGTTGTAGCTTTCTATTGGGTCATTGCCATGGCGTTGTAGAAGAACCA 96
||||||||||| ||| | ||| ||||| || ||||||||||||| ||| || ||||| ||
Sbjct 52 TGCTATATTATTTGTGGGAGCCTTCTAATGAGTCATTGCCATGGTGTTATAAAAGAAGCA 111
Query 97 AAGATATTAAAAAGTAATAAAGATCTTGAAATAGAGCAAAAACTTAAGCTTATCAACAAA 156
|||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 112 AAGACATTAAAAAGTAATGAAGATCTTGAAATAGAGCACAAACTTAAGCTTATCAACAAA 171
Query 157 CCTGCGGTTAAAATCATAAAGTCTATTAATGGTGAGCGGTATGGCTGCGTGGATTTCTAC 216
||||| |||||||| ||||| ||||||||||||| || ||||| || ||||||||||||
Sbjct 172 CCTGCATTTAAAATCGTAAAGACTATTAATGGTGAACGATATGGGTGTGTGGATTTCTAC 231
Query 217 AAACAACCAGGACTTGACCACTCATCCATGAAGAACTACACATTTCACTATAAGATGCGT 276
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 232 AAACAACCAGGACTTGACCACTCATCCATGAAGAACCACACATTTCACCATAAGATGCGT 291
Query 277 ATATCATACCTC-GGAGGGTCAAAAATGAAAAGAGAGACACATAGTAACAAAACATTTGG 335
|| ||||| ||| | ||| ||||||||||||||| |||||||||| |||| |||||||||
Sbjct 292 ATGTCATA-CTCTGAAGGATCAAAAATGAAAAGAAAGACACATAGAAACACAACATTTGG 350
Query 336 TCACTTTTGGGAGAATGGCGTAGGCTGTCCTATTGGTACCGTTCCTATACTTCGAGTCAA 395
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||
Sbjct 351 CCACTTTTGGGAGAATGGCGTAGGTTGTCCCATTGGTACCGTTCCTATACCTCGAGTCAC 410
Query 396 TAAAGAGGCTCTTTTGAAAATGAAATCTTTCGATGGCGATAATTCTAATCCGCAAAGTTC 455
|||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 411 TAAAGACGCTCTTTTGAGAATGAAATCCTTCGATAGCGATAATTCTAATCCGCAAAGTTC 470
Query 456 GTGGAGCAAAACCTATAAACCTACATCTTCTATTGAAAG-TCATCATTTTGCTGTGGTGC 514
|||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||||
Sbjct 471 GTGGAGCAAAACCTATAAACCTGCATCTTCTATTG-ACGATCATCATTTTGCTGTGGTGC 529
Query 515 GGACTACTAAAGGGAAACCTAGGAGTTACAATGGTGCGTCTATGAATATTAATGCATTCA 574
| ||||||||| || || ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 530 GAACTACTAAA-GG-AA-CTAGGAGTTACAATGGTGCATCTATGAATATTAATACATTCA 586
Query 575 CTCCTTCAGTTGAACCTATGCAATTTAGCTCTACTCGGATGCATTTTCAAATTGGAAATG 634
|||||||||||| |||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 587 CTCCTTCAGTTGGACCTATGCAATTCAGCGCTTCTCGGATGCATTTTCAAATTGGAAATG 646
Query 635 AATTCATCCAAGTTGGTTGGACCGTACACCCGCAATTATACCATGACT-CTAACTCGCGG 693
||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| |||
Sbjct 647 AATTCATCCAAGTTGGTTGGATCGTACACCCACAATTATACCATGACTTC-AACTCTCGG 705
Query 694 CTATTCGTATTTACAAATTCAGGAGGACATGAGTGTTATAATCCCTTCTGTCCAAATGGA 753
|||||||||||||||| || |||||| ||| ||||||||||| ||||||||| | |||
Sbjct 706 ATATTCGTATTTACAAAATCGGGAGGAAATGCGTGTTATAATCTCTTCTGTCCTGACGGA 765
Query 754 TCCGGAATGATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTACTGGG-AAAAAAGG 812
|||||||||||||||||| || |||| || ||||||||||||||| | | | |||||||
Sbjct 766 TCCGGAATGATACTAGTTCGTCAAGACTTAACTCCTGGTCTACTTGCCGAGCAAAAAAG- 824
Query 813 TATTGACTTCACCATAATGAAGGACAAAATCAACGGGAATTGGTGGCTGTTGATGGGCAC 872
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 825 TATTGACTTCGCCATAATGAAGGACAAAATCAACGGGAATTGGTGGTTGTTGATGGGTAC 884
Query 873 CTCCTTGG-AAGAAATTGGGTTCTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAA 931
|| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 885 ATC-TTGGGAAGAAGTTGGGTTTTGGCCATCAAGCAGATTCAAAGAAAGTTCTGGTACAA 943
Query 932 GGGTCGAATGGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCGATGGGAAATA 991
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 944 TGGTCGAATGGGGTGGTGAAGTCTATAGCCCTTCGCCTCCAAATCCTCCAATGGGGAATA 1003
Query 992 GTCAGTATCCGACGGGGAGCCCCATAGAAGACTCATATGTCCGTTTGATCACGACTGTAG 1051
|||| ||||||| ||||||||||| || |||||||||||||||||| || |||||||| |
Sbjct 1004 GTCATTATCCGAAGGGGAGCCCCAAAGTAGACTCATATGTCCGTTTAATTACGACTGTGG 1063
Query 1052 ACGAAAATTATAATACCGACCAAATTGTGGAAAACACAGAGAGGTATTCAGACAGTTGTT 1111
|||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 1064 ACGAAAATTATAATACTGACAAAACAGTGAAAAACACAGAGAGGTATTCAGACAGTTGTT 1123
Query 1112 ATGAAGTGAGAGATACAATAGAGACGTTTTGG-GCACATGTAGGTCATCTTATTACCTAT 1170
|| ||||||||||| ||| |||||||||||| || ||||| ||||||||||||| |||
Sbjct 1124 ATAAAGTGAGAGATGCAACGGAGACGTTTTGGAGC-CATGTCGGTCATCTTATTATATAT 1182
Query 1171 GGAGGCCCTAGGTGTATATAA 1191
||||||||| |||||| ||||
Sbjct 1183 GGAGGCCCTGGGTGTAAATAA 1203
> AT4G10210.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:6357052-6360377 FORWARD LENGTH=1337
Length=1337
Score = 1166 bits (631), Expect = 0.0
Identities = 1007/1184 (85%), Gaps = 44/1184 (4%)
Strand=Plus/Plus
Query 37 TGCTATATTATATGTTGTAG-CTTTCT-ATTGGGTCATTGCCATGGCGTTGTAGAAGAAC 94
||||||||| |||||||||| |||| | | || ||||||| |||||||||||||||| |
Sbjct 86 TGCTATATTCTATGTTGTAGCCTTT-TGA-TGAGTCATTGTCATGGCGTTGTAGAAGCAG 143
Query 95 CAAAGATATTAAAAAGTAATAAAGATCTTGAAATAGAGCAAAAACTTAAGCTTATCAACA 154
||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 144 CAAAGGCATTAAAAAGCAATGAAGATCTTGAAATAGAGCAAAAACTTGAGCTTATCAACA 203
Query 155 AACCTGCGGTTAAAATCATAAAGTCTATTAATGGTGAGCGGTATGGCTGCGTGGATTTCT 214
||| | |||||||||||||||||| || ||||||||| || ||||| || ||||||||||
Sbjct 204 AACATACGGTTAAAATCATAAAGTGTACTAATGGTGAACGATATGGGTGTGTGGATTTCT 263
Query 215 ACAAACAACCAGGACTTGACCACTCATCCATGAAGAACTACACATTTCACTATAAGATGC 274
||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 264 ACAAACAACCAGGACTTGACCACTCATTGATGAAGAACCACACATTTCACCATAAGATGC 323
Query 275 GTAT-AT--CATACCTCGGAGGGTCAAAAATGAAAAGAGAGACACATAGTAACAAAACAT 331
|| | || |||||| || ||| |||||||| |||| | ||||||||| |||||||||||
Sbjct 324 GTTTGATGTCATACCCCGAAGGATCAAAAATTAAAAAACAGACACATATTAACAAAACAT 383
Query 332 TTGGTCACTTTTGGGAGAATGGCGTAGG-CTGTCCTATTGGTACCGTTCCTATACTTCGA 390
|||||||||||||| ||||||||||||| | ||||||||||||| |||||||||||| |
Sbjct 384 TTGGTCACTTTTGGAAGAATGGCGTAGGTC-GTCCTATTGGTACAGTTCCTATACTTTTA 442
Query 391 GTCAATAAAGAGGCTCTTTTGAAAATGAAATCTTTCGATGGCGATAATTCTAATCCGCAA 450
|||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 443 GTCAGCAAAGAAGCTCTTTTGAAAATGAAATCTTTTGATGGTGATAATTCTAATCCCCAA 502
Query 451 AGTTCGTGGAGCAAAACCTATAAACCTACATCTTCTATTGAAAGTCATCATTTTGCTGTG 510
||||||||||| ||||||||||||||||| ||||||| || | |||||||||||||||||
Sbjct 503 AGTTCGTGGAGTAAAACCTATAAACCTACGTCTTCTAATGGAGGTCATCATTTTGCTGTG 562
Query 511 GTGCGGACTACTAAAGGGAAACCTAGGAGTTACAATGGTGCGTCTATGAATATTAATGCA 570
||||| ||||| ||||| ||||| ||||| || ||||| | | ||||||| |||||| ||
Sbjct 563 GTGCGTACTACGAAAGGAAAACCAAGGAGATATAATGGAGTGGCTATGAACATTAATTCA 622
Query 571 TTCACTCCTTCAGTTGAACCTATGCAATTTAGCT-CTACTCGGATGCATTTTCAAATTGG 629
|||| |||| |||||| ||||||| |||| || | || |||||||||||||||||||||
Sbjct 623 TTCAATCCTCCAGTTGGACCTATGGAATTCAG-TGCTGGTCGGATGCATTTTCAAATTGG 681
Query 630 AAATGAATTCATCCAAGTTGGTTGGACCGTACACCCGCAATTATACCATGACT-CTAACT 688
|||||||||| ||||||||||||||||||||||||| |||||||| || |||| | ||||
Sbjct 682 AAATGAATTCGTCCAAGTTGGTTGGACCGTACACCCACAATTATATCACGACTTC-AACT 740
Query 689 CGCGGCTATTCGTATTTACAAATTCAGGAGGACATGAGTGTTATAATCCCTTCTGTCCAA 748
| ||||| ||| ||| ||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 741 CACGGCTGTTCATATATACTAATTCAGGAGGACATGGGTGTTATAATCCCTTATGTCCGG 800
Query 749 AT-GGATCCGGAATGATACTAGTTAGTGAAGATTTTACTCCTGGTCTACTTACTGGGAAA 807
| ||||||||||| |||||||| ||| | || ||||||||||| ||||||| | |
Sbjct 801 -TCGGATCCGGAATAATACTAGTCAGTCATGAAGTTACTCCTGGTTTACTTACCAAGCAC 859
Query 808 AAAGGTATT-GA-CTTCACCATAATGAAGGACAAAATCA-ACGGGAATTGGTGGCTGTTG 864
|| | | || || || | ||||||| ||||||||||| | ||||| |||||||||| |||
Sbjct 860 AACGAT-TTCGAACT-CTCCATAATTAAGGACAAAAT-ATACGGGCATTGGTGGCTTTTG 916
Query 865 ATGGG---CA----C--CTC--CTTGGAA-GAAATTGGGTTCTGGCCATCA-AGCAGATT 911
||||| || | ||| ||||||| |||||||||||||||||| || | || ||
Sbjct 917 ATGGGTAACAGTAGCAGCTCAACTTGGAAAGAAATTGGGTTCTGGCCAACACAT-AGGTT 975
Query 912 CAAAGAAAGTTCTGGTACAAGG-GTCGAATGGGGTGGTGAAGTCTATAGCCCTTCGCCTC 970
||||||||||| ||||||| || |||||||||||||||||||||||||||||| || ||
Sbjct 976 CAAAGAAAGTTTTGGTACA-GGTGTCGAATGGGGTGGTGAAGTCTATAGCCCTGCGTCTA 1034
Query 971 CAAATCCTCCGATGGGAAATAGTCAGTATCCGACGGGGAGCCCCATAGA-AGACTCATAT 1029
||| |||||| ||||| |||||||| | ||||| ||||||||||| | | ||||||||||
Sbjct 1035 CAAGTCCTCCTATGGGTAATAGTCATTTTCCGAAGGGGAGCCCCAAA-ATAGACTCATAT 1093
Query 1030 GTCCGTTTGATCACGACTGTAG-ACGAAAATTATAATACCGACCAAA-TTGTGGAAAACA 1087
|||||||||||||||||| | | ||||||||||| | ||| | ||||| ||||||
Sbjct 1094 GTCCGTTTGATCACGACT-TGGGACGAAAATTATGGTTTGGAC-ATGGTTGTGAAAAACA 1151
Query 1088 CAGAGAGGTATTCAGACAGTTGTTATGAAGTGAGAGATACAATAGAGACGTTTTGGGCAC 1147
||||||| | |||| ||||||||||| |||||| |||| || |||| |||||||| ||
Sbjct 1152 CAGAGAGATTTTCAAACAGTTGTTATAAAGTGAAAGATGCAC-AGAGTCGTTTTGGCCAG 1210
Query 1148 ATGTAGGTCATCTTATTACCTATGGAGGCCCTAGGTGTATATAA 1191
|||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 1211 ATGTAGGTCATCTTATCGTTTATGGAGGCCCCAGGTGTACATAA 1254
> AT4G23080.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:12096786-12098888 FORWARD LENGTH=819
Length=819
Score = 383 bits (207), Expect = 2e-105
Identities = 405/496 (82%), Gaps = 32/496 (6%)
Strand=Plus/Plus
Query 713 CAGGAGGACATGAGTGTTATAATCCCTTCTGTCCAAATGGATCCGGAATGATACTAGTTA 772
||||||||| || |||||||||| |||| ||||| |||||| |||||||||||||| ||
Sbjct 245 CAGGAGGACGTGCGTGTTATAATACCTTATGTCCGGATGGATTCGGAATGATACTAG-TA 303
Query 773 -GTGAAGATTTTACTCCTGGTCTACTTACTGGGAAAAAAGGTATT-GACTTCACCATAAT 830
|| ||||| ||| |||||| | |||||| | | | | || | || |||| |||||||
Sbjct 304 GGTCAAGATCTTATTCCTGGACGACTTACCGAGCACAGAGAT-TTAAACTTTGCCATAAT 362
Query 831 GAAGGACAAA-ATCAACGGGAATTGGTGGCTGTTGATGGGCAC---C-TCCT-T-GGAAG 883
||||||||| | |||||| ||||||||| |||||||||| || | | | | ||||
Sbjct 363 CAAGGACAAAGA-CAACGGAAATTGGTGGTTGTTGATGGGTACTGGCATATTATGGGAAA 421
Query 884 AAATTGGGT-TCTGGCCATC-AAGCAGATTCAAAGAAAGTTCTGGTACAAG-GGTCGAAT 940
||||| ||| |||||||| | ||| || ||||||||||||| |||||| || | ||||||
Sbjct 422 AAATT-GGTGTCTGGCCAGCAAAG-AGGTTCAAAGAAAGTTTTGGTAC-AGAGATCGAAT 478
Query 941 GGGGTGGTGAAGTCTATAGCCCTTCG-CCTCCAAATCCTCCGATGGGAAATAGTCAGTAT 999
|||||||||||||| ||||||||||| || |||| |||||||||||| ||||| || |||
Sbjct 479 GGGGTGGTGAAGTCCATAGCCCTTCGTCC-CCAAGTCCTCCGATGGGTAATAGCCATTAT 537
Query 1000 CCGACGGGGAGCCCCATAGAAGACTCATATGTCCGTTTGATCACGACTGTAG-ACGAAAA 1058
|||| ||||| ||||| | |||||||||||||||||||||||||||| | | |||||||
Sbjct 538 CCGAAGGGGACCCCCAGACTAGACTCATATGTCCGTTTGATCACGACT-TGGGACGAAAA 596
Query 1059 TTATAATACCGACCAAATT-GTGGAAAACACAGAGAGGTATTCAGACAGTTGTTATGAAG 1117
||||||| ||||| || || ||| ||||||||||||| ||||||||| |||||||| |||
Sbjct 597 TTATAATGCCGAC-AATTTTGTGAAAAACACAGAGAGATATTCAGACGGTTGTTATAAAG 655
Query 1118 TGAGAGATACAATAGAGA--C--G-TT-TTGG-GCACATGTAGGTCATCTTATTACCTAT 1170
|| ||||||||||| | | | | || |||| | | ||||||| ||||||||| |||
Sbjct 656 TGGGAGATACAATATATATGCAAGATTCTTGGAGAA-ATGTAGGACATCTTATTGTTTAT 714
Query 1171 GGAGGCCCTAGGTGTA 1186
|||||||| | |||||
Sbjct 715 GGAGGCCCCAAGTGTA 730
Score = 298 bits (161), Expect = 9e-80
Identities = 216/243 (89%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 415 ATGAAATCTTTCGATGGCGATAATTCTAATCCGCAAAGTTCGTGGAGCAAAACCTATAAA 474
||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAAATCTTTAAATGGCGATAATTATAATCCGCAAAGTTCGTGGAGCAAAACATATAAA 60
Query 475 CCTACATCTTCTATTGAAAGTCATCATTTTGCTGTGGTGCGGACTAC-TAAAGGGAAACC 533
|||| ||||||| || | ||||||||||||||||| |||||||| | ||||| ||| |
Sbjct 61 TCTACGTCTTCTAATGGACGTCATCATTTTGCTGTGTTGCGGACT-CTTAAAGAAAAAAC 119
Query 534 TAGGAGTTACAATGGTGCGTCTATGAATATTAATGCATTCACTCCTTCAGTTGAACCTAT 593
||| |||||||||| |||| |||||||| ||||||||||| ||||| |||| |||||
Sbjct 120 AAGGCGTTACAATGGAGCGTATATGAATACTAATGCATTCAATCCTTTGGTTGGACCTAC 179
Query 594 GCAATTTAGCTCTACTCGGATGCATTTTCAAATTGGAAATGAATTCATCCAAGTTGGTTG 653
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCAGTTCAGCTCTACTCGGATGCATTTTCAAATTGGAAATGAATTCATCCAAGTTGGTTG 239
Query 654 GAC 656
|||
Sbjct 240 GAC 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5