BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895154
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10260.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1496 0.0
> AT4G10260.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr4:6371377-6372770 REVERSE LENGTH=1084
Length=1084
Score = 1496 bits (810), Expect = 0.0
Identities = 922/977 (94%), Gaps = 4/977 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAATACTCCATTGATTGTTTCTTTTGGTGAAATGCTTATCGACTTTGTCCCTGAC 60
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTAATACTCCATTGATAGTTTCCTTTGGTGAAATGCTTATCGACTTTGTCCCTGAC 60
Query 61 ACTTCTGGTGTATCTTTAGCTGAGTCCACCGGTTTTCTCAAAGCCCCTGGTGGTGCTCCG 120
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTCTGGTGTTTCTTTAGCTGAGTCCACCGGTTTTCTCAAAGCCCCTGGTGGTGCTCCT 120
Query 121 GCTAATGTTGCTTGTGCCATTACCAAACTCGGTGGCAAATCCGCTTTCATCGGCAAGTTT 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GCTAATGTTGCTTGTGCCATCACCAAACTCGGTGGCAAATCAGCTTTCATCGGCAAGTTT 180
Query 181 GGTGATGATGAGTTTGGACACATGCTGGTGAACATATTGAAGAAGAATGGTGTGAACAGC 240
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||
Sbjct 181 GGTGATGATGAGTTTGGACACATGTTGGTTAACATATTGAAGAAGAACGGTGTGAACAGT 240
Query 241 GAAGGTGTTTG-TTTCGATACCAACGCAAGAACCGCGTTGGCTTTTGTGACGTTGAAGAA 299
||||||||||| ||| |||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 241 GAAGGTGTTTGCTTT-GATACCAATGCAAGAACCGCGTTGGCCTTTGTGACTTTGAAGAA 299
Query 300 AGATGGTGAGAGAGAGTTTATGTTTTACAGGAATCCGAGTGCTGATATGCTTC-TGAAAG 358
||||||||||||||||||||||||||||||||| || ||||| || |||| || ||||||
Sbjct 300 AGATGGTGAGAGAGAGTTTATGTTTTACAGGAACCCTAGTGCGGACATGC-TCTTGAAAG 358
Query 359 AATCTGAGCTCAACAAGGATCTTATCAAGAAAGCTAAGATTTTCCATTATGGTTCCATTA 418
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 AATCTGAACTCAACAAGGATCTTATCAAGAAAGCTAAGATTTTCCACTATGGTTCCATTA 418
Query 419 GCTTGATCTCTGAGCCGTGTAGAGCGGCTCACATGGCTGCGATGAAAACCGCTAAAGATG 478
|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 419 GCTTGATCTCTGAGCCATGTAGAACAGCTCACATGGCTGCGATGAAAACCGCTAAAGATG 478
Query 479 CAGGAGTTTTACTCTCGTATGACCCGAATGTTCGGTTGCCTCTCTGGCCTTCTACTGAAG 538
| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 479 CGGGAGTCTTACTCTCTTATGACCCGAACGTTCGGTTGCCTCTTTGGCCTTCTACTGAAG 538
Query 539 CTGCTATAGAAGGCATCAAAAGTATTTGGAATGAGGCTGATATTATCAAGGTAAGTGATG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 CTGCTATAGAAGGCATCAAAAGTATTTGGAATGAGGCTGATATTATCAAGGTAAGCGATG 598
Query 599 ATGAGGTAACATTCCTCACCCGTGGAGATGCGGAAAAGGATGATGTTGTTTTGTCTCTCA 658
|||||||||| || || || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 599 ATGAGGTAACGTTTCTAACGCGTGGAGATGCGGAGAAGGATGATGTTGTTTTGTCTCTTA 658
Query 659 TGCATGATAAGCTCAAGCTGCTTATTGTAACTGATGGAGAAAAAGGTTGCAGATACTACA 718
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 659 TGCATGATAAGCTTAAGCTGCTTATTGTTACTGATGGAGAGAAAGGTTGCAGATACTACA 718
Query 719 CAAAGAAATTTAAAGGGAGAGTGCCCGGATACGCTGTGAAAGCAGTTGATACAACTGGAG 778
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 719 CAAAGAAATTCAAAGGGAGAGTGCCTGGATACGCTGTGAAAGCAGTTGACACAACTGGAG 778
Query 779 CTGGTGATTCTTTTGTTGGTGCATTTCTTGTCTCACTAGGCAAAGATGGCTCCATACTCG 838
|||||||||| |||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 779 CTGGTGATTCATTTGTTGGTGCATTTCTTGTCTCATTGGGAAAAGATGGCTCCATACTCG 838
Query 839 ATGATGAAGGGAAGTTGAAGGAAGCACTTGCCTTTGCAAATGCATGTGGAGCTGTGTGCA 898
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 839 ATGATGAAGGGAAGCTGAAGGAAGCACTTGCCTTTGCAAATGCATGTGGAGCAGTGTGTA 898
Query 899 CAACTCAGAAGGGAGCTATTCCTGCACTTCCCACTCCATCTGATGCTCAAAAGCTCATGA 958
| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 CTACTCAGAAAGGAGCTATTCCTGCACTTCCCACTCCAGCTGATGCTCAAAAGCTCATGA 958
Query 959 AATCTAAGTCCAAATAG 975
|||||||||| ||||||
Sbjct 959 AATCTAAGTCTAAATAG 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5