BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895168
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10350.1 | Symbols: ANAC070, BRN2, NAC070 | NAC domain conta... 1659 0.0
> AT4G10350.1 | Symbols: ANAC070, BRN2, NAC070 | NAC domain containing
protein 70 | chr4:6415256-6416829 REVERSE LENGTH=1057
Length=1057
Score = 1659 bits (898), Expect = 0.0
Identities = 986/1029 (96%), Gaps = 3/1029 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTCGTCGTCGAACGGAGGAGTGCCACCTGGTTTTCGGTTTCATCCGACGGACGAA 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGTTCTTCGTCGAACGGAGGAGTGCCACCTGGTTTCCGGTTTCATCCGACGGACGAA 60
Query 61 GAGCTTCTCCATTACTACTTGAAGAAGAAAATCTCTTACCAAAAGTTTGAGATGGAAGTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCTTCTCCATTACTACTTGAAGAAGAAAATCTCTTACCAAAAGTTTGAGATGGAAGTC 120
Query 121 ATCAGAGAGGTTGACTTAAACAAGCTTGAGCCTTGGGATTTGCAAGAGAGATGCAAGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCAGAGAGGTTGACTTAAACAAGCTTGAGCCTTGGGATTTGCAAGAGAGATGCAAGATA 180
Query 181 GGGTCAACACCGCAGAACGAATGGTATTTCTTCAGCCACAAGGACAGGAAATATCCGACA 240
|| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GGATCAACACCACAAAACGAATGGTACTTCTTCAGCCACAAGGACAGGAAATATCCGACG 240
Query 241 GGGTCAAGGACCAACCGTGCTACTCATGCAGGGTTCTGGAAGGCGACGGGACGTGACAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGTCAAGGACCAACCGTGCTACTCATGCAGGGTTCTGGAAGGCGACGGGACGTGACAAG 300
Query 301 TGCATAAGGAACTCTTACAAGAAGATAGGAATGAGGAAGACACTTGTGTTCTACAAAGGT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCATAAGGAACTCTTACAAAAAGATAGGAATGAGGAAGACACTTGTGTTCTACAAAGGT 360
Query 361 AGAGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTACCGTCTTGAAGACCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 AGAGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTACCGTCTTGAAGACGCT 420
Query 421 GATGATCCTCAAGCCAACCCTAGTGAAGATGGATGGGTGGTATGTAGAGTGTTCATGAAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GATGATCCTCAAGCCAACCCTAGTGAAGATGGATGGGTGGTATGTAGAGTGTTTATGAAG 480
Query 481 AAAAATTTGTTCAAGGTAGTAAATGAAGGTGGCACAAGCATTAACTCATCGGACCAACAC 540
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 481 AAAAATTTGTTCAAGGTAGTAAATGAAGGTAGCTCAAGCATTAACTCATTGGACCAACAC 540
Query 541 AACCATGATGCATCCAACAACAACCACACACTTCAAGCTCGTAGCTTTATGCACCGAGAC 600
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 AACCATGACGCATCTAACAACAACCATGCACTTCAAGCTCGTAGCTTTATGCACCGAGAC 600
Query 601 AGTCCATACCAGCTTGTACGTAACCACGGAGCCACGACATTTGAACTCAACAAGCCTGAC 660
|||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 601 AGTCCATACCAGCTAGTACGTAACCACGGAGCCATGACATTCGAACTTAACAAGCCTGAC 660
Query 661 CTTACTCTTCATCAATACCCACCAATCTTCCACAAGCCACCTTCACTTGGATTTGACTAC 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTGCTCTTCATCAATACCCACCAATCTTCCACAAGCCACCTTCACTTGGATTTGACTAC 720
Query 721 TCCTCAGGACTTGCAAGGGACTGTGAGAGTGCGGCGAGTGAAGGGTTACAATACCAGCAA 780
|| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 721 TCTTCAGGACTTGCAAGGGACAGTGAGAGTGCGGCTAGTGAAGGGTTACAATACCAGCAA 780
Query 781 GCGTGTGAGCCGGGTTTAGAGGTCGGTACTTGTGGGACAGTGGCTAGTCATGATAGTCAT 840
|||||||||||||||||||| || ||||| |||| |||||||||||||||| | | ||||
Sbjct 781 GCGTGTGAGCCGGGTTTAGACGTTGGTACATGTGAGACAGTGGCTAGTCAT-A-A-TCAT 837
Query 841 CAACAAGGTTTAGGTGAATGGGCAATGATGGATAGACTTGTGACTTGTCACATGGGAAAT 900
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CAACAAGGTCTAGGTGAATGGGCAATGATGGATAGACTTGTGACTTGTCACATGGGAAAT 897
Query 901 GAAGATTCCTCTAGAGGGATTAGGTTTGAGGATGGTAACAACAATTCTTCGTCTGTTGTC 960
|||||||||||||||||||||| || ||||||||||||||||||||| || ||||| ||
Sbjct 898 GAAGATTCCTCTAGAGGGATTACGTATGAGGATGGTAACAACAATTCGTCCTCTGTGGTT 957
Query 961 CAGCCAGTTCCTGCGACGAACCAGCTTACGTTGCGCAGTGAGATGGATTTCTGGGGTTAT 1020
||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 958 CAGCCAGTTCCCGCGACGAACCAGCTAACATTGCGTAGTGAGATGGATTTCTGGGGTTAT 1017
Query 1021 TCTAAATAG 1029
|||||||||
Sbjct 1018 TCTAAATAG 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5