BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895170

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05670.2 | Symbols:  | signal recognition particle binding |...   224    5e-58


> AT5G05670.2 | Symbols:  | signal recognition particle binding 
| chr5:1695730-1698124 REVERSE LENGTH=1113
Length=1113

 Score =  224 bits (121),  Expect = 5e-58
 Identities = 153/169 (91%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  60   GAACGACTTCAGCATTGGAATTGAAGGAGAAGTGTTCTCCTTCTCGCATTGCTACAACAA  119
            ||| ||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||
Sbjct  786  GAATGACTTCACCATTGGAATTGAGGGAGAAGTGTTCTCCTTCACGCATTGCTCCAACAA  845

Query  120  AGTCACTGTAGCTGAGGCATCTGGACTCACCGGAGAAACCGTCCAGATCCAAGACTTCAT  179
            ||||||||| ||||||||||||||||| |||||||||||| |||||||  ||||||||||
Sbjct  846  AGTCACTGTCGCTGAGGCATCTGGACTTACCGGAGAAACCATCCAGATTGAAGACTTCAT  905

Query  180  TCGAGAATACATCAAGCCTTTAGCTCAAACGTGCATTAATAGATTGAAT  228
            |||||||||||||||||| | ||||| ||| ||| || |||||||||||
Sbjct  906  TCGAGAATACATCAAGCCATGAGCTCCAACATGCCTTCATAGATTGAAT  954



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5