BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895176
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10430.1 | Symbols: | TMPIT-like protein | chr4:6454881-645... 848 0.0
AT1G33230.1 | Symbols: | TMPIT-like protein | chr1:12046641-12... 510 6e-144
AT4G10414.1 | Symbols: | Pseudogene of AT4G10430 | chr4:645131... 479 2e-134
> AT4G10430.1 | Symbols: | TMPIT-like protein | chr4:6454881-6458089
REVERSE LENGTH=1366
Length=1366
Score = 848 bits (459), Expect = 0.0
Identities = 492/508 (97%), Gaps = 1/508 (0%)
Strand=Plus/Plus
Query 178 TTTCCTGTTCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGT 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTTCCTGTCCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGT 609
Query 238 GAGAACATACTAAGAGCTAATGGGAGCGATATTCGTCCATGGTGGCTATATCATCACTAT 297
||||| ||| |||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 610 GAGAATATATTAAGAGCTAACGGAAGCGATATTCGTCCATGGTGGCTATATCATCATTAT 669
Query 298 TGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGT 729
Query 358 GTCCAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GTCCAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCC 789
Query 418 ATGCTTCTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAG 477
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAG 849
Query 478 GCTAAGAGACTGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTG 537
||||||||| ||||||| || ||||||||||||||||| |||||||||||| ||||||||
Sbjct 850 GCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTG 909
Query 538 CTATGTCCTATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTA 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTATGTCCTATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTA 969
Query 598 AGAAAAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGTATTCTTCTG 657
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 970 AGAAAAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGGATTCTTCTG 1029
Query 658 GTAGTGATGGCTGTTGGGA-CTTCATAA 684
||||||||||| ||||||| ||||||||
Sbjct 1030 GTAGTGATGGCAGTTGGGAACTTCATAA 1057
> AT1G33230.1 | Symbols: | TMPIT-like protein | chr1:12046641-12050066
FORWARD LENGTH=1519
Length=1519
Score = 510 bits (276), Expect = 6e-144
Identities = 434/510 (85%), Gaps = 11/510 (2%)
Strand=Plus/Plus
Query 181 CCTGTTCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAG 240
|||||||||||||| |||||||||| ||||||| |||||||| |||| |||||| |||
Sbjct 666 CCTGTTCAGCTCTACCAGGCTTGGCTACTGTTTCTTTATGCTGGTTTGGTTATGCGAGAG 725
Query 241 AACATACTAAGAGCTAATGGGAGCGATATTCGTCCATGGTGGCTATATCATCACTATTGT 300
||||| |||||||||||||||| ||||| ||| |||||||||| |||||||| |||| |
Sbjct 726 AACATTTTAAGAGCTAATGGGAGTGATATCCGTTCATGGTGGCTTTATCATCATTATTTT 785
Query 301 GCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTC 360
|| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 786 GCAATGGCTATGTCCCTTGTCAGTCTCACTTGGGAAATCAAAGGTCAACCAAACTGCGTT 845
Query 361 CAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATG 420
||||| |||| |||||| | ||||||||| |||||||||||||||||||||||||| |||
Sbjct 846 CAGAAGCAGAAAGGAGTGCGTCTTTTCCTCCAATGGGCTATGATGCAAGGTGTCGCGATG 905
Query 421 CTTCTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCT 480
||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 906 CTTCTGCAAAATAGATATCAGCGCCAAAGATTATACACTCGCATTGCACTTGGAAAGGCT 965
Query 481 AAGAG-ACTGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGCT 539
|| || | |||| ||||||||||||||||||||||| || ||||| ||| ||| ||| |
Sbjct 966 AAAAGGA-TGGACGTCGTATGGGGAGAAACGGCTGGAGTAGATGGGCAACTATTGCTATT 1024
Query 540 ATGTCCTATACTGTTCATTTTACAGGTG-TTTGAAGCATACGTTGGACTGCTGTTGCTAA 598
|| |||||| |||||| |||||||| | |||||||||||||| ||| | | |||||| |
Sbjct 1025 ATTTCCTATTTTGTTCACTTTACAGG-GCTTTGAAGCATACGTGGGATTCCAGTTGCTTA 1083
Query 599 GAAAAACAGTA-ACTGGAGTT-GTTAATGAATGGCAGGTGAT-GGTTTGTGGTATTCTTC 655
| | | || | ||| | | || |||||||||||| || ||||||||| |||||||
Sbjct 1084 GGACAGT-GTTGA-TGGGGGTAGTCGCTGAATGGCAGGT-ATTGGTTTGTGGCATTCTTC 1140
Query 656 TGGTAGTGATGGCTGTTGGGA-CTTCATAA 684
|||| |||||||| |||| | ||||||||
Sbjct 1141 TGGTTGTGATGGCCATTGGAAACTTCATAA 1170
> AT4G10414.1 | Symbols: | Pseudogene of AT4G10430 | chr4:6451317-6452716
REVERSE LENGTH=556
Length=556
Score = 479 bits (259), Expect = 2e-134
Identities = 348/387 (90%), Gaps = 21/387 (5%)
Strand=Plus/Plus
Query 197 AGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGT-GAGAACATACTAAGAGCT 255
||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||||||||
Sbjct 169 AGGCTTGGCTGTTGTTTCTCTATGCTGGGTTAGCTATGC-TAGAGAACATATTAAGAGCT 227
Query 256 AATGGGAGCGATATTCGTCCATGG---------TGGCTATATCATCACTATTGTGCCATG 306
|| |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 228 AAGGGGAGCAATATTCGTCCATGGTACTCTTATTGGCTATATCATCACTATTGTGCCATG 287
Query 307 GCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAA 366
||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 288 GCTCTGGCCCTTGTCAGCCTCACTTGGGAAAGCAAAGGTCAACCAAACTGTGTCCAGAAA 347
Query 367 CAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAG-G-TGTCGCCATGCTTC 424
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 348 CAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGAGGTGTCGCCATGCTTC 407
Query 425 TACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAG--G-CTA 481
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 408 TATAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGCAGGCTA 467
Query 482 AGAGACTGGATGTCGTATGGGGAGAAACGGCTGGCGTTGATGGACAATTATGGCTGCT-A 540
||||| || |||| |||||||||||||| |||||||||| |||||| ||||||| || |
Sbjct 468 AGAGAATGTATGTTGTATGGGGAGAAACAGCTGGCGTTGGCGGACAACTATGGCT-CTTA 526
Query 541 TGTCCTATACTGTTCATTTTACAGGTG 567
||| || || ||||| |||||||||
Sbjct 527 TGT---ATGCTATTCATATTACAGGTG 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5