BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895182

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contai...   571    2e-162


> AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing 
protein | chr5:3911363-3914080 FORWARD LENGTH=2718
Length=2718

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 357/380 (94%), Gaps = 3/380 (1%)
 Strand=Plus/Plus

Query  202  ATGATTTCTGAAGCTGCAGATTTGTTCTTCGCTTTGAGGAGTGAAGGTATTTTTCCCAGC  261
            ||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||
Sbjct  395  ATGATTTCTGAAGCTGCGGATTTGTTTTTCGCTTTGAGGAATGAAGGTATTTATCCCAGC  454

Query  262  TCAGATTCGTTAACACTGTTGCTTGATCATCTTGTGAAGGCGAAACAATTCAGAGTGACT  321
            |||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  455  TCAGATTCGTTAACGCTTTTGCTTGATCATCTTGTGAAGACGAAACAATTCAGAGTGACT  514

Query  322  ATAAACGTGTTCTTGAATATTCTGGATTCTGATTTTCGTCCGAGTAAGTTCATGTATGGG  381
            ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct  515  ATAAACGTGTTTTTGAACATTCTCGAATCTGATTTTCGTCCGAGTAAGTTCATGTATGGG  574

Query  382  AAAGCAATTCAAGCTACCGTCAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAT  441
            ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| 
Sbjct  575  AAAGCAATTCAAGCTGCTGTGAAATTGAGCGATGTAGGTAAAGGTTTAGAGCTGTTTAAC  634

Query  442  CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGG  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  635  CGGATGAAGCACGATAGAATCTATCCCAGTGTGTTTATCTACAATGTCCTTATTGATGGA  694

Query  502  TTATGTAAAGTGAGAAAG-ATGAAAGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG  560
            || ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  695  TTGTGTAAAGGGA-AAAGGATGAATGATGCAGAACAGTTGTTCGACGAAATGCTTGCAAG  753

Query  561  AAGATTGTTGC-TTCTTTGA  579
            ||||||||| | ||||||||
Sbjct  754  AAGATTGTTACCTTCTTTGA  773


 Score =  241 bits (130),  Expect = 7e-63
 Identities = 163/178 (92%), Gaps = 6/178 (3%)
 Strand=Plus/Plus

Query  1    ATGGTGACTCGCTTAAGACTCGTTTCGAAATCTTCTCGTTACGCCACCGTCAAGTTCACT  60
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  26   ATGGTGACTCGCTTAAGACTCGTTTCGAGATCTTCTCGTTACGCCACCGTCAAGTTCACT  85

Query  61   GAGTCTGTCTCAGCATCATGCTCATGTCGTC-TCT-T-CTCAGCCTCCACCGACCCCAAA  117
            || |||||||||||||   |||||||||||| ||| | ||| ||||||||||||||| ||
Sbjct  86   GACTCTGTCTCAGCAT---GCTCATGTCGTCGTCTCTTCTCTGCCTCCACCGACCCCGAA  142

Query  118  TCCGAATCTCAACCCGCACAAGCTCCGCCTACGAATGCCGTCACCGGAGACGAAGAGC  175
             ||||||||||||||| |||||| |||||||||||| ||||||||||||||||| |||
Sbjct  143  CCCGAATCTCAACCCGAACAAGCCCCGCCTACGAATCCCGTCACCGGAGACGAAAAGC  200



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5