BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895189
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1469 0.0
AT4G10500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 793 0.0
> AT4G10490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:6483867-6485360
FORWARD LENGTH=1261
Length=1261
Score = 1469 bits (795), Expect = 0.0
Identities = 967/1050 (92%), Gaps = 12/1050 (1%)
Strand=Plus/Plus
Query 13 GCAACATCAAAGCTCCTCGTATCCGACATCGCCTCAGTTGTTGATCACGTCCCTTCAAAC 72
||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 37 GCAGCATCAAAACTCCTCGTATCCGACATCGCCTCTGTCGTTGATCACGTCCCTTCAAAC 96
Query 73 TACGTCCGACCAGTCTCTGACCGTCCAAACATGTCTGAGGTTGAAACTTTTGGCGATTCT 132
|||||| |||||||||||||||||||||| ||||| |||||| |||||| ||||| |||
Sbjct 97 TACGTCAGACCAGTCTCTGACCGTCCAAAAATGTCCGAGGTTCAAACTTCCGGCGACTCT 156
Query 133 A-TCCCCTTAATCGATCTCCAAGACCTCCATGGACCTAATCGAGCCAACATTATCAATCA 191
| ||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 157 ATTCCTC-TAATCGATCTCCACGACCTCCATGGACCTAATCGAGCTGACATTATCAATCA 215
Query 192 GTTTGCTCATGCATGCTCTTCTTATGGCTTCTTTCAGATCAAGAACCATGGAGTGCCAGA 251
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||
Sbjct 216 GTTTGCTCATGCATGCTCTTCTTGTGGCTTCTTCCAGATCAAGAACCATGGAGTACCAGA 275
Query 252 AGAAATAATCAAGCAAATGATGAATGTGGGAAGAGAGTTTTTCCATCAATCAGAGAGCGA 311
||||| ||||| |||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 276 AGAAACGATCAAAAAAATGATGAATGCGGCAAGAGAGTTTTTCCGGCAATCAGAGAGCGA 335
Query 312 AAGGGTGAAGCATTACTCTGCGGATACCAAAAAGACAACAAGACTCTCCACAAGTTTCAA 371
||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 336 AAGAGTGAAGCATTACTCAGCAGATACCAAAAAGACAACGAGACTCTCCACAAGTTTCAA 395
Query 372 CGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGACTCCATTGTTATCCTAT 431
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 396 CGTTTCCAAAGAGAAAGTCTCTAACTGGAGAGACTTCCTTCGACTCCATTGCTACCCTAT 455
Query 432 CGAAGATTTCATTCAC-GAATGGCCCTCAACTCCAGTT-TCTTTTAGAGAAGTCACAGCT 489
|||||||||||| || |||||||||||||| || | | ||||| ||||||||||||||
Sbjct 456 CGAAGATTTCAT-CAATGAATGGCCCTCAACACC-GATCTCTTTCAGAGAAGTCACAGCC 513
Query 490 GAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGAGGCAATCTCAGAGAGC 549
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GAATACGCTACAAGCGTTAGAGCCTTGGTTCTGACACTTCTTGAGGCAATCTCAGAGAGC 573
Query 550 TTAGGCCTTGTGAAAGACCGTGTAAGCAATACTTTAGGAAAACACGGTCAACACATGGCT 609
||||| |||| ||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 574 TTAGGTCTTGCGAAAGACCGTGTAAGCAATACAATAGGCAAACATGGTCAACACATGGCT 633
Query 610 ATAAACTATTATCCGCCG-TGTCCGCAACCCGAGCTAACTTACGGACTTCCCGGACATAA 668
|| ||||| ||||| ||| ||||| ||||| |||||||||||||||||||| || |||||
Sbjct 634 ATTAACTACTATCC-CCGGTGTCCTCAACCAGAGCTAACTTACGGACTTCCGGGGCATAA 692
Query 669 AGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTGGTTTACAGGT-TTTCG 727
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 693 AGATGCAAACTTGATCACTGTTCTTCTTCAAGATGAAGTCTCTGGTTTACAGGTGTTTA- 751
Query 728 AAGACGGTAAATGGATTGCTGTTAATCCTATTCCCAACACTTTTATAGTCAACCTTGGTG 787
|||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 752 AAGATGGTAAATGGATCGCTGTTAATCCTGTTCCCAACACTTTCATAGTCAACCTTGGTG 811
Query 788 ACCAGATGCAGGTGATAAGCAATGACAAATACAAGAGTGTGCTACACAGAGCTGTTGTGA 847
|||| |||||||| ||||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 812 ACCAAATGCAGGTTATAAGCAATGAAAAATACAAGAGTGTTCTTCACAGAGCGGTTGTGA 871
Query 848 ACATCGACAAAGAGAGGATATCAATACCGACATTCTACTGTCCTTCTGAAGATGCTATGA 907
||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 872 ACAGCGACATGGAGCGGATATCGATACCGACATTCTACTGTCCTTCTGAAGATGCTGTGA 931
Query 908 TTGGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCATGCTATTTACAGAAACT 967
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 932 TTAGTCCAGCACAAGAGCTGATCAATGAGGAAGAAGACTCTCCTGCTATTTACAGAAACT 991
Query 968 TTACATATGCTGAGTATTTTGAAAAGTTTTGGGACACAGCATTTGCA-ACTGAGAGCTGT 1026
||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 992 TTACATATGCTGAATATTTTGAAAAGTTTTGGGACACAGCATTTG-ATACTGAGAGCTGT 1050
Query 1027 ATTGACTCGTTCAAAGCTTCCACCGCCTAA 1056
||||||||||||||||| ||||||||||||
Sbjct 1051 ATTGACTCGTTCAAAGCATCCACCGCCTAA 1080
> AT4G10500.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:6491017-6492476
FORWARD LENGTH=1256
Length=1256
Score = 793 bits (429), Expect = 0.0
Identities = 866/1071 (81%), Gaps = 53/1071 (5%)
Strand=Plus/Plus
Query 1 ATGGCAGCTTCTGCAACATCAAAGCTCCTCGTATCCGACATCGCCTCAGTTGTTGATCAC 60
|||||| ||||||||| ||| |||||| | || || || ||||||| | | ||||
Sbjct 73 ATGGCAACTTCTGCAATATCTAAGCTCTTAGTGTCTGATTTCGCCTC--CT-CCGTTCAC 129
Query 61 GTCCCTTCAAACTACGTCCGACCAGTCTCTGACCGTCCAAACATGTCTGAGGTTGAAACT 120
||||||||||||| ||||||||| |||| |||||||| ||| |||| ||||| || | |
Sbjct 130 ATCCCTTCAAACTATGTCCGACCAATCTCCGACCGTCCGAACTTGTCCGAGGTCGAGAGT 189
Query 121 TTTGGCGATTCTATCCCCT-TAATCGATCTCCAAGACCTCCATGGACCTAATCGAGCC-A 178
| ||||||||| || |||| | |||||||||| ||||||||||||||||||||||||
Sbjct 190 TCTGGCGATTCCAT-CCCTCTGATCGATCTCCGGGACCTCCATGGACCTAATCGAGCCGT 248
Query 179 ACATTAT-CAATCAGTTTGCTCA-TGCATGCTCTTCTTATGGCTTCTTTCAGATCAAGAA 236
| ||| | ||| || ||||| | ||| || || ||||||| |||||||||||||||||
Sbjct 249 A-ATTGTCCAA-CAACTTGCT-AGTGCGTGTTCCACTTATGGTTTCTTTCAGATCAAGAA 305
Query 237 CCATGGAGTGCCAGAAGA-AATAATCAAGCAAATGATGAA-TG-TGGGAAGAGAGTTTTT 293
|||||||| |||| | | || |||| ||||| || | || | |||||||| ||
Sbjct 306 TCATGGAGTACCAG-ATACAACCGTCAATAAAATG-CAAACCGTTGCG-AGAGAGTTCTT 362
Query 294 CCATCAATCAGAGAGCGAAAGGGTGAAGCATTACTCTGCGGATACCAA-AAAGACAACAA 352
||||||| | ||||||||||| || || || ||||| || ||| |||| ||||||||| |
Sbjct 363 CCATCAACCCGAGAGCGAAAGAGTCAAACACTACTCCGCAGAT-CCAACAAAGACAACGA 421
Query 353 GACTCTCCACAAGTTTCAACGTTTCCAAAGAGAAAGTCTCT-AACTGGAGAGACTTCCTT 411
|||||||||| ||||||||||| | ||| ||||||| | ||||||||||||||||||
Sbjct 422 GACTCTCCACCAGTTTCAACGTCGGCGCAGACAAAGTCT-TGAACTGGAGAGACTTCCTT 480
Query 412 CGACTCCATTG-TTATCCTATCGAAGATTTCATTC-ACGAATGGCCCTCAACT-CCAGTT 468
|||||||||| || ||| || |||||||||| || | |||||||| || | | ||| |
Sbjct 481 AGACTCCATTGCTT-TCCCATAGAAGATTTCA-TCGAAGAATGGCCATCTAGTCCCA-TC 537
Query 469 TCTTTTAGAGAAGTCACAGCTGAATATGCTACAAGCGTTAGAGCCTTGGTTCTGACACTT 528
||||| ||||||||||||||||||||||| || ||||| ||||| |||||| ||| ||||
Sbjct 538 TCTTTCAGAGAAGTCACAGCTGAATATGCCACGAGCGTAAGAGCTTTGGTTTTGAGACTT 597
Query 529 CTTGAGGCAATCTCAGAGAGCTTAGGCCTTGTGAAA--GACCGTGTAAGCAATACT-TTA 585
|||||||| ||||||||||| ||||||| | ||||| |||| | ||||||||| | |||
Sbjct 598 CTTGAGGCCATCTCAGAGAGTTTAGGCC-T-TGAAAGCGACCATATAAGCAATA-TATTA 654
Query 586 GGAAAACACGGTCAACACATGGC-TATAAACTATTATCCGCCGTGTCC-GCAACCCGAGC 643
|| ||||||| |||||||||||| | | ||||| |||||||||||||| | |||||||||
Sbjct 655 GGCAAACACGCTCAACACATGGCGT-TTAACTACTATCCGCCGTGTCCAG-AACCCGAGC 712
Query 644 TAACTTACGGACTTCCCGGACATAAAGATGCAAAC-TTGATCACTGTTCTTCTTCAAGAT 702
|||||||||||||||||||||||||||| ||| | || |||||||| |||||||||||
Sbjct 713 TAACTTACGGACTTCCCGGACATAAAGACCCAACCGTT-ATCACTGTCCTTCTTCAAGAC 771
Query 703 GAAGTCTCTGGTTTACAGGT-TTTCGAAG-ACGGTAAATGGATTGCTGTTAATCCTATTC 760
||||||||||||| || || ||| ||| | | ||||||| | ||||||| ||| ||||
Sbjct 772 CAAGTCTCTGGTTTGCAAGTCTTT--AAGGATGATAAATGGGTCGCTGTTAGTCCAATTC 829
Query 761 CCAACACTTTTATAGTCAACCTTGGTGACCAGATGCAGGTGATAAGCAATGACAAATACA 820
|||||||||| || ||||| | || ||||| |||||||| ||||||||||| |||||||
Sbjct 830 CCAACACTTTCATCGTCAATATCGGCGACCAAATGCAGGTCATAAGCAATGATAAATACA 889
Query 821 AGAGTGTGCTACACAGAGCTGTTGTGAACATCGACAAAGAGAGGATATCAATACCGACAT 880
|||||||||| || ||||| || || |||| ||| || ||| || |||| || ||||| |
Sbjct 890 AGAGTGTGCTCCATAGAGCCGTAGTAAACACCGAGAACGAGCGGTTATCGATTCCGACTT 949
Query 881 TCTACTGTCC-TTCTGA-AGATGCTA-TGATTGGTCCAGCACAAGAGCTGATCAATGAGG 937
|||| | ||| ||| | |||||| | |||||||||||||||| |||||| |||||||
Sbjct 950 TCTATT-TCCCTTCA-ACAGATGC-AGTGATTGGTCCAGCACACGAGCTGGTCAATGA-- 1004
Query 938 AAGAAGACTCTCATGCTATTTACAGAAACTTTACATATGCTGAGTATTTTGAAAAGTTTT 997
| ||||||||| ||| |||||||||| || | | || |||||||| || |||||||
Sbjct 1005 AC-AAGACTCTCTTGCCATTTACAGAACCTACCCGTTTGTTGAGTATTGGGACAAGTTTT 1063
Query 998 GGGACACAGCATTTGCAACTGAGAGCTGTATTGACTCGTTCAAAGCTTCCA 1048
|| ||| | || |||| |||| ||||||| | ||| | ||||||||| |||
Sbjct 1064 GGAACAGATCACTTGCTACTGCGAGCTGTCTAGACGCCTTCAAAGCT-CCA 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5