BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895202
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10620.1 | Symbols: | P-loop containing nucleoside triphosp... 2776 0.0
> AT4G10620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:6564279-6566504
FORWARD LENGTH=1914
Length=1914
Score = 2776 bits (1503), Expect = 0.0
Identities = 1706/1803 (95%), Gaps = 18/1803 (1%)
Strand=Plus/Plus
Query 1 ATGCTTTCGAAAGCAGCGAGAGAGCTTTCTTCATCAAAGCTCAAACCTTTATTCGCTCTT 60
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 19 ATGCTTTCGAAAGCAGCAAGAGAGCTTTCATCATCAAAGCTTAAACCTTTATTCGCTCTT 78
Query 61 CCTCTCTCCTCCTTCAAATCTCCCATACCCACTAAACCAAACCC-T-T-CTCCTTCATTT 117
| |||||| |||||||||||| |||||||||||||||||||||| | | ||||||||| |
Sbjct 79 CATCTCTCTTCCTTCAAATCTTCCATACCCACTAAACCAAACCCTTCTCCTCCTTCATAT 138
Query 118 CTCAATCTCCATCACTCCAACACTA-CATCAAAATCACCATTTCTT-CGTTTCTACTCTT 175
||||||| ||| |||| ||||| || | |||||| | |||||| || |||||||||||||
Sbjct 139 CTCAATCCCCACCACTTCAACAATATC-TCAAAACCGCCATTT-TTGCGTTTCTACTCTT 196
Query 176 CTTC-T--TCCTCCAGTCTCCTTCCGCTAAACAGAGATGGGAACTACAACGATACGACTT 232
|||| | ||||| | ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 197 CTTCTTCGTCCTCTAATCTCCTTCCGCTAAACAGAGATGGGAATTACAACGATACAACTT 256
Query 233 CAGTCACCATCTCCGTTTGCCCCGGTTGTGGAGTTCATATGCAAAACTCAAACCCAAAAC 292
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 257 CAATCACAATCTCCGTTTGCCCAGGTTGTGGAGTTCATATGCAAAACTCAAACCCAAAAC 316
Query 293 ACCCAGGTTTCTTCATCAAACCATCAACAGAGAAACAGAGGAATGATTTGAATCTTCGTA 352
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 317 ATCCAGGTTTCTTCATCAAACCATCAACAGAGAAACAGAGGAACGATTTGAATCTTCGTG 376
Query 353 ATCTCGTACCCATCTCTCAAGAACCTGAATTTATAGACTCAATCAAACGAGGGTTTATCA 412
||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 377 ATCTCACACCCATCTCTCAAGAGCCTGAATTTATAGATTCAATCAAACGAGGGTTTATCA 436
Query 413 TTGAACCAATCAACAGTTCTGACTTAAACCCTAAAGATCATGAAGAAACAGATCAAGATT 472
|||||||||||| |||||||||||||||||| ||| |||| | ||| ||| |||||
Sbjct 437 TTGAACCAATCAGTAGTTCTGACTTAAACCCT--AGA-GATGATG-AAC-CATC-AGATT 490
Query 473 CAAGACCATTGGTTTGTGCTAGGTGTCATTCACTTAGACATTACGGGAAAGTGAAAGATC 532
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 491 CAAGACCATTGGTTTGTGCTAGGTGTCATTCACTTAGACATTACGGGAGAGTGAAAGATC 550
Query 533 CAACGGTTGAGAATCTTCTTCCTGATTTTGATTTTGATCATACTGTTGGTAGGAGACTAG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CAACGGTTGAGAATCTTCTTCCTGATTTTGATTTTGATCATACTGTTGGTAGGAGACTAG 610
Query 593 GTTCAGCTTCTGGTGCTAGAACTGTTGTGTTGATGGTTGTTGATGCTTCTGATTTCGATG 652
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 611 GTTCAGCTTCTGGTGCTAGAACTGTTGTGTTGATGGTTGTTGATGCTTCAGATTTCGATG 670
Query 653 GTTCTTTTCCAAAGAGAGTAGCTAAGCTTGTATCGAGAACGATTGATGAGAATAATATGG 712
|||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 671 GTTCTTTTCCTAAGAGGGTAGCTAAGCTTGTGTCGAGAACTATTGATGAGAATAATATGG 730
Query 713 CTTGGAAAGAAGGGAAATCAGGAAATGTTCCTAGAGTTGTTGTTGTTGTGACTAAGATTG 772
|||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct 731 CTTGGAAAGAAGGGAAGTCTGGTAATGTACCTAGAGTTGTTGTTGTTGTGACTAAGATTG 790
Query 773 ATTTGTTACCGAGTTCGTTGTCGCCGACTAGGTTTGAGCATTGGGTTAGATTAAGAGCTC 832
|||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||
Sbjct 791 ATTTGTTACCGAGTTCGTTGTCTCCTAATAGGTTTGAGCAATGGGTTAGATTAAGAGCTC 850
Query 833 GTGAAGGTGGTTTAAGTAAGATTACTAAGTTGCATTTTGTTAGTCCTGTTAAGAATTGGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GTGAAGGTGGTTTAAGTAAGATTACTAAGTTGCATTTTGTTAGTCCTGTTAAGAATTGGG 910
Query 893 GGATTAAGGATTTGGTTGAAGATGTGG-TGGCTATGGCTGGGAAGAGAGGGCATGTTTGG 951
||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 911 GGATTAAGGATTTGGTTGAAGATGTGGCTG-CTATGGCTGGGAAGAGAGGTCATGTTTGG 969
Query 952 GCGGTTGGATCGCAGAATGCCGGGAAAAGTACGTTGATTAATGCGGTTGGGAAGGTTGTT 1011
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 970 GCTGTTGGATCGCAGAATGCCGGAAAAAGTACGTTGATTAATGCTGTTGGGAAGGTTGTT 1029
Query 1012 GGTGGGAAAGTTTGGCATTTGACGGAAGCTCCTGTGCCGGGAACTACATTGGGGATAATT 1071
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1030 GGTGGGAAAGTTTGGCATTTGACGGAAGCTCCTGTGCCGGGAACTACGTTGGGGATAATT 1089
Query 1072 AGGATTGAAGGTGTTTTGCCTTTTGAGGCGAAGTTGTTTGATACTCCGGGGTTGTTGAAT 1131
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1090 AGGATTGAAGGTGTTTTGCCTTTTGAGGCTAAGTTGTTTGATACTCCGGGGCTGTTGAAT 1149
Query 1132 CCGCATCAGATCACGACGAGGCTTACGAGAGAAGAGCAGAGACTTGTTCATATTAGCAAG 1191
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1150 CCGCATCAGATCACTACGAGGCTTACGAGAGAGGAGCAGAGACTTGTTCATATTAGCAAG 1209
Query 1192 GAGCTTAAACCAAGGACTTATAGGATCAAGGAAGGTTATACGGTTCATATCGGTGGGCTA 1251
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1210 GAGCTTAAACCAAGGACTTATAGGATCAAGGAAGGTTATACGGTTCACATTGGTGGGCTA 1269
Query 1252 ATGAGACTTGACATTGATGAATCGTCTGTTGATTCTCTATATGTAACAGTTTGGGCGTCT 1311
||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 1270 ATGAGACTTGACATTGATGAAGCATCTGTTGATTCTCTATATGTGACAGTTTGGGCGTCT 1329
Query 1312 CCTTATGTTCCACTTCACATGGGGAAGAAGGAGAATGCTTACAAAACACTCGAGGACCAT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 CCTTATGTTCCACTTCACATGGGGAAGAAGGAGAATGCTTACAAAACACTCGAGGACCAT 1389
Query 1372 TTCGGTTGTCGATTGCAGCCGCCGATTGGGGAGAAGCGGGTTGAAGAGTTGGGGAAATGG 1431
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1390 TTCGGTTGTCGATTGCAGCCGCCGATTGGAGAGAAGCGGGTTGAAGAGTTGGGGAAATGG 1449
Query 1432 GTTAGAAAGGAATTCCGAGTGAGTGGGAGCAGTTGGGACACAAGTTCAGTAGATATTGCT 1491
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1450 GTTAGAAAGGAATTCCGAGTGAGTGGAACCAGTTGGGACACAAGTTCAGTAGATATAGCT 1509
Query 1492 GTTTCAGGTCTCGGTTGGTTTGCGTTAGGACTCAAAGGAGAAGCGATTCTAGGTGTATGG 1551
|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 1510 GTTTCAGGTCTCGGTTGGTTTGCGTTAGGACTAAAAGGAGACGCGATTTTAGGTGTATGG 1569
Query 1552 ACTCACGAGGGGATTGATGTCTTCTGCCGTGACTCATTACTCCCGCAACGAGCAAACACT 1611
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1570 ACTCACGAGGGGATTGATGTCTTCTGCCGTGACTCATTGCTCCCGCAACGAGCACACACT 1629
Query 1612 TTTGAAGACTCTGGTTTCACTGTCTCCAAGATCGTTGCTAAAGCTGATAGAAATTTTAAT 1671
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1630 TTTGAAGACTCTGGATTCACTGTCTCCAAGATCGTTGCCAAAGCTGATAGAAATTTTAAC 1689
Query 1672 CAAATTCACAAGGAGGAAACGCAGAAGAAACGAAAACCCAACAAGTCTTCTTCAGGTTCT 1731
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 1690 CAAATTCACAAGGAGGAAACACAGAAGAAACGAAAACCCAACAAGTCTTTTTCAGATTCT 1749
Query 1732 GTATCTGACGGAGAAAATTGCCGCGAGGTGTCACAGCCTTCAGATATCTTACCAACAATA 1791
||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GTATCTGACAGAGACAATAGCCGCGAGGTGTCACAGCCTTCAGATATCTTACCAACAATG 1809
Query 1792 TGA 1794
|||
Sbjct 1810 TGA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5